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. 2021 Jul 10;6(8):e547–e556. doi: 10.1016/S2468-2667(21)00133-X

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© 2021 The Author(s). Published by Elsevier Ltd. This is an Open Access article under the CC BY-NC-ND 4.0 license

Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.

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Maximum likelihood phylogenetic trees of Australian SARS-CoV-2 samples

Samples from COVID-19 cases in Victoria diagnosed between Jan 25, 2020, and Jan 31, 2021, and interstate samples from cases uploaded to AusTrakka before Feb 11, 2021, are included. (A) Sequences from Victorian cases diagnosed during period 3 (May 31, 2020, to Dec 6, 2021) identified as within local transmission networks or genomic clusters indicated. Travel-only clusters and unclustered sequences have not been indicated. Further information on genomic clusters 661 and 203 are provided in appendix 1 (p 7). (B) Sequences from Victorian cases diagnosed during period 4 (Dec 7, 2020, to Jan 31, 2021) identified as within local genomic clusters or variants of concern are indicated. Regions of the phylogenetic tree containing B.1.1.7 and B.1.351 variants of concern are also labelled. Travel-only clusters and unclustered sequences have not been indicated. (C) Sequences from interstate samples (excluding Victoria) identified within transmission network G.