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. 2021 Jun 7;166(8):2119–2130. doi: 10.1007/s00705-021-05116-9

Table 2.

Known core attP sites of SPβ-related phages

Phage strain Host attP sequence (5′– > 3′) attB sequence (5′– > 3′) Integration locus
SPβ B. subtilis 168 ACAGATAA/AGCTGTAT ACAGATAA/AGCTGTAT spsM
H2 B. amyloliquefaciens H CCCTATAAATAACTA CCCTATAAATAACTA Intergenic
H2 B. subtilis 168 CCCTATAAATAACTA* CCCttTAaAAATAACTA* Intergenic*
φ3T B. subtilis 168 aaaatgacataCCTACtgtgttttta gctatgcggttCCTACctttgtcgtt kamA
Goe11 B. subtilis ∆6 aaaatgacataCCTACtgtgtttttt* gctatgcggttCCTACctttgtcgtt* kamA*
Goe12 B. subtilis ∆6 ACAGATAA/AGCTGTAT* ACAGATAA/AGCTGTAT* spsM*
Goe13 B. subtilis ∆6 ACAGATAA/AGCTGTAT* ACAGATAA/AGCTGTAT* spsM*

The SPβ att sites were oriented based on Abe et al., 2017 [52]. Capital letters represent the inverted repeat recognised by SprA, a forward slash indicates the cleavage site, and underlined italic letters represent the 3' overhangs. The att sites of φ3T are presented as described by Suzuki et al., 2020 [55]. Capital letters indicate the conserved core, and lowercase letters indicate the associated imperfect repeat sequences. The att site sequences and integration loci marked with a star (*) are based on personal bioinformatic investigations and have not been confirmed experimentally.