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. Author manuscript; available in PMC: 2021 Jul 12.
Published in final edited form as: Nat Genet. 2015 Feb 16;47(4):345–352. doi: 10.1038/ng.3220

Table 1.

Functional annotation of 258,113 unique cis sQTLs obtained from a total of 572,333 cis sQTLs

SNP functional class Count Proportion
Intronic 150,440 0.58
Intergenic 81,370 0.32
5′ near gene 10,795 0.04
3′ near gene 2,251 0.01
5′ UTR 1,233 0.005
3′ UTR 5,908 0.02
Synonymous 2,926 0.01
Missense 2,235 0.01
Noncoding RNA 909 0.004
5′ splice site 20 7.75 × 10−5
3′ splice site 12 4.65 × 10−5
Stop loss 1 3.87 × 10−6
Stop gain 12 4.70 × 10−5
Frameshift 1 3.87 × 10−6