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. Author manuscript; available in PMC: 2021 Jul 12.
Published in final edited form as: Mol Cell. 2021 Jan 19;81(5):1100–1115.e5. doi: 10.1016/j.molcel.2020.12.033

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Bacterial and virus strains
E.coli: BL21(DE3) Competent cells Novagen Cat#69450–3
E.coli: DH5α Competent cells ThermoFisher Cat#18265017
E.coli: Turbo Competent cells Weidi Cat#DL1081
Chemicals, peptides, and recombinant proteins
ULP1 Home-made N/A
T7 RNA polymerase Home-made N/A
Urea Sangon Biotech CAS: 57-13-6 Cat#A610148-0500
Diethyl pyrocarbonate Sangon Biotech CAS: 1609-47-8 Cat#B600154-0100
40% acrylamide and bis-acrylamide solution, 29:1 Sangon Biotech Cat#B546013–0500
Critical commercial assays
PureLink HiPure Plasmid Megaprep Kit ThermoFisher Cat#K210008
Deposited data
Coordinate of LshCas13a-crRNA-anti-tag RNA ternary complex This paper PDB: 7DMQ
Density map of LshCas13a-crRNA-anti-tag RNA ternary complex This paper EMDB: EMD-30767
Recombinant DNA
pRSF-Duet-1-His6-SUMO-LshCas13a, wild-type and various mutants This paper N/A
pRSF-Duet-1-His6-SUMO-LbuCas13a, wild-type and various mutants This paper N/A
pUT7-LshCas13a crRNA, wild-type and mutant This paper N/A
pUT7-LbuCas13a crRNA, wild-type and mutant This paper N/A
pUT7-target RNA (RNA1–6, 21-spacer RNA) This paper N/A
pUT7-non-target RNA This paper N/A
pCDF-Duet-1-LshCas13a-CRISPR, wild-type and various mutants This paper N/A
pRSF-Duet-1-LbuCas13a-CRISPR, wild-type and various mutants This paper N/A
pBR322-EYFP, with or without anti-tag sequence This paper N/A
Oligonucleotides
56-nt LshCas13a crRNA: GGCCACCCCAAUAUCGAAGGGGACUAAAACUAGAUUGCUGUUCUACCAAGUAAUCCAU This paper N/A
57-nt LbuCas13a crRNA: GGACCACCCCAAAAAUGAAGGGGACUAAAACUAGAUUGCUGUUCUACCAAGUAAUCCAU This paper N/A
50-nt LbuCas13a crRNA: GGACCACCCCAAAAAUGAAGGGGACUAAAACUAGAUUGCUGUUCUACCAAGU This paper N/A
Target RNA1: GGGAAGUUCAACUCUUUAUGUAUUGAUCUUCCAAAAUauggauuacuugguagaacagcaaucuaCUC This paper N/A
Target RNA2: GGGAAGUUCAACUCUUUAUGUAUUGAUCUUCCAAAAUauggauuacuugguagaacagcaaucuaGUUUUCUC This paper N/A
Target RNA3: GGGAAGUUCAACUCUUUAUGUAUUGAUCUUCCAAAAUauggauuacuugguagaacagcaaucuaGUUUUAGUCUC This paper N/A
Target RNA4: GauggauuacuugguagaacagcaaucuaCAAAAUCA IDT N/A
Target RNA5: GauggauuacuugguagaacagcaaucuaGUUUUUCA IDT N/A
Target RNA6: GauggauuacuugguagaacagcaaucuaGUUUUAGU IDT N/A
21-nt Target RNA without anti-tag: GacuugguagaacagcaaucuaCAAAAUCA IDT N/A
21-nt Target RNA with anti-tag: GacuugguagaacagcaaucuaGUUUUAGU IDT N/A
102-nt non-target RNA: GGAUAACUCAAUUUGUAAAAAAGUUUUAGAGCUAGAAAUAGCAAGUUAAAAUAAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGCUUUC This paper N/A
Software and algorithms
Coot Emsley et al., 2010 https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot;
RRID:SCR_014222
Phenix Adams et al., 2010 https://www.phenix-online.org;
RRID: SCR_014224
SerialEM data collection software Mastronarde, 2005 https://bio3d.colorado.edu/SerialEM/;
RRID: SCR_017293
MotionCor2 Zheng et al., 2017 https://msg.ucsf.edu/em/software/motioncor2.html;
RRID: SCR_016499
CTFFIND4 Rohou and Grigorieff, 2015 https://grigoriefflab.janelia.org/ctffind4/;
RRID: SCR_016732
RELION Scheres, 2012 https://www3.mrc-lmb.cam.ac.uk/relion//index.php?title=Main_Page%2F;
RRID: SCR_016274
ResMap Kucukelbir et al., 2014 http://resmap.sourceforge.net/
USCF Chimera Pettersen et al., 2004 https://www.cgl.ucsf.edu/chimera/;
RRID: SCR_004097
PyMOL The PyMOL Molecular Graphics System, Version 2.2.3, Schrodinger, LLC https://pymol.org/2/;
RRID: SCR_000305
CueMol Version 2.2.3.434 http://www.cuemol.org;
RRID: SCR_019052
Clustal Omega Madeira et al., 2019 https://www.ebi.ac.uk/Tools/msa/clustalo/;
RRID: SCR_001591
PRISM Version 7.0 https://www.graphpad.com/scientific-software/prism/;
RRID: SCR_002798
Other
Amicon concentrators (30K) Millipore Cat#UFC903024
HisTrap FF (5 ml) GE Healthcare Cat#17-5255-01
HiTrap Heparin HP (5 ml) GE Healthcare Cat#17-0407-03
HiLoad 16/600 Superdex 200 pg GE Healthcare Cat#28989335
Superdex 200 10/300 GL GE Healthcare Cat#17517501
UltrAufoil R1.2/1.3 300 mesh grids Quantifoil Cat# BQRU1.2/1.3–3A-B
Whatman Elutrap electroelution system Sigma-Aldrich Cat#WHA10447700