Table 2.
T cell clonotypes shared amongst native and neoepitopes.
| Patient Set & Clonotype | Subject | TRA | TRB | Cells’ native epitopes | Cells Neo-epitopes |
|---|---|---|---|---|---|
| ND01/ND02 1 | ND01 | CALISGGGADGLTF | CSVGSQPQHF | 21 | 11 |
| ND01/ND02 4 | ND01 | CAAINAGNNRKLIW | CAWNKKKGLTYNEQFF | 5 | 5 |
| ND01/ND02 5 | ND01 | CATDAMNSNYQLIW | CASTTGPQNEKLFF | 2 | 7 |
| ND01/ND02 9 | ND01 | CAVGTGTASKLTF | CASSTTSLSSYEQYF | 4 | 2 |
| ND01/ND02 12 | ND01 | CAVSTGGGNKLTF | CSARLGAQNTGELFF | 4 | 3 |
| ND01/ND02 13 | ND01 | CAVPRSGNTGKLIF | CASSLPGVTNYGYTF | 3 | 4 |
| ND01/ND02 20 | ND01 | CAANMYALNF | CASSPGQGANTGELFF | 4 | 2 |
| ND01/ND02 21 | ND01 | CAGIQGAQKLVF | CASSFIAGGPSDTQYF | 1 | 1 |
| ND01/ND02 27 | ND01 | CILRDSGATNKLIF | CAAGQPNTGELFF | 3 | 3 |
| ND01/ND02 273 | ND01 | CAVPDQTGANNLFF | CASSTHRVNAEAFF | 1 | 1 |
| ND01/ND02 276 | ND01 | CALMNQGGKLIF | CSVEDPDSRTDTQYF | 1 | 1 |
| ND01/ND02 19 | ND01 | CAVISNTGKLIF | CASSRGQGAEKLFF | 3 | 2 |
| ND01/ND02 23 | ND01 | CATDPWSGANSKLTF | CASGFTGGYNEQFF | 3 | 1 |
| ND01/ND02 230 | ND01 | CASSGGSYIPTF | CASSLGRGASTEAFF | 1 | 1 |
| ND01/ND02 234 | ND01 | CVARRGGGGNKLTF | CASSPGTGQETQYF | 1 | 1 |
| ND01/ND02 2351/3227 | ND01 | CAVRSNQAGTALIF CAVGGNTNAGKSTF CAVRSNQAGTALIF |
CASSAAGASSYEQYF CASSAAGASSYEQYF |
1 | 1 |
| ND01/ND02 28 | ND01 | CLVGDISTSGTYKYIF | CASRHARQPQHF | 3 | 2 |
| ND01/ND02 287 | ND01 | CAGSGTMNYGGSQGNLIF | CASSGQGGGNTEAFF | 1 | 1 |
| ND01/ND02 30 | ND01 | CVVTGYNNNDMRF | CAIREGYGYTF | 2 | 3 |
| ND01/ND02 37 | ND01 | CAGPDMDSNYQLIW | CASRYRGGSGRELFF | 2 | 3 |
| ND01/ND02 38 | ND01 | CAFIWGSSNTGKLIF | CASRRGQANYGYTF | 2 | 1 |
| ND01/ND02 48 | ND01 | CILARSGAGSYQLTF | CASSYFGRGTDTQYF | 3 | 2 |
| ND01/ND02 18 | ND01 | CVVNTVTGGGNKLTF | CASSLRGPYGYTF | 2 | 2 |
| ND01/ND02 22 | ND01 | CAVRIQGAQKLVF | CASSYSEVYNEQFF | 2 | 2 |
| ND01/ND02 26 | ND01 | CALSASKIIF | CASSLSRESNQPQHF | 1 | 1 |
| ND01/ND02 263 | ND01 | CALSDRPGSARQLTF | CSASPTPQVGGTEAFF | 1 | 1 |
| ND01/ND02 264 | ND01 | CALPLSKTGANNLFF | CASSSTGGYEQYF | 1 | 1 |
| ND01/ND02 221 | ND01 | CALRSGANSKLTF | CASSLSLAPSDEQFF | 1 | 1 |
| ND01/ND02 2297/6 | ND01 | CAVSDTGGFKTIF CAVGPAGTGGFKTIF CAVSDTGGFKTIF |
CATSETGKYQETQYF CATSETGKYQETQYF |
4 | 5 |
| ND01/ND02 29 | ND01 | CAVNPGNTPLVF | CSARDDRTAAEAFF | 3 | 1 |
| ND01/ND02 31/42 | ND01 | CAVADSNYQLIW CAVSYTGGGNKLTF CAVSYTGGGNKLTF |
CASSSLTGGLYNEQFF CASSSLTGGLYNEQFF |
4 | 5 |
| ND01/ND02 32 | ND01 | CAVRDGGTGGFKTIF | CASSLGAQYTGELFF | 1 | 1 |
| ND01/ND02 33 | ND01 | CAAPLKTSYDKVIF | CASSLDRGVQPQHF | 2 | 2 |
| ND01/ND02 335 | ND01 | CAVEDGGNDYKLSF CAVVPPFTGGGNKLTF |
CASSAGTGRHTDTQYF | 1 | 1 |
| ND01/ND02 349 | ND01 | CALSEARDAGNMLTF | CSARGQGVATSNQPQHF | 1 | 1 |
| ND01/ND02 319 | ND01 | CLVGDIRGGGYQKVTF | CSVEVDRAGTEAFF | 1 | 1 |
| ND01/ND02 43 | ND01 | CAASGWGSARQLTF | CASSYRAPGDNSPLHF | 2 | 2 |
| ND01/ND02 47 | ND01 | CALKAAGNKLTF | CASAGEHTGELFF | 3 | 1 |
| ND01/ND02 49 | ND01 | CAPRGNDYKLSF | CSAIDNTDTQYF | 2 | 2 |
| ND01/ND02 53 | ND01 | CAVDAAGNKLTF | CASSADILLREQYF | 3 | 1 |
| ND01/ND02 54 | ND01 | CAAGGATNKLIF | CASSPRALENTEAFF | 1 | 1 |
| ND01/ND02 57 | ND01 | CAVSNQAGTALIF | CASSLRGTGGYTF | 1 | 1 |
| ND01/ND02 58 | ND01 | CALSENTNAGKSTF | CSAQGGGDTEAFF | 1 | 2 |
| ND01/ND02 62 | ND01 | CALSRTGYSTLTF | CASVVLGNTEAFF | 3 | 1 |
| ND01/ND02 69 | ND01 | CAVFTGGFKTIF | CATSVRGDYNEQFF | 2 | 2 |
| ND01/ND02 11 | ND01 | CAVYHAGNMLTFT | CASSTGTGGYEQYF | 1 | 2 |
| ND01/ND02 113 | ND01 | CAGAGGSYIPTF | CASSPGGPVGNTIYF | 1 | 1 |
| ND01/ND02 116 | ND01 | CAMRKGDYKLSF CAVLGGGGFKTIF |
CASSAGRGSDYGYTF | 1 | 1 |
| ND01/ND02 117 | ND01 | CAASAIKYGGSQGNLIF | CASSQDTASGAYEQYF | 1 | 1 |
| ND01/ND02 140 | ND01 | CAASAALQTGANNLFF | CASSLGQGAEAFF | 2 | 1 |
| ND01/ND02 142 | ND01 | CALTSRGGFGNVLHC | CSAREGAGANVLTF | 2 | 1 |
| ND01/ND02 151 | ND01 | CAVKEVDSSYKLIF | CASSTGTGAEMNTEAFF | 1 | 1 |
| ND01/ND02 153 | ND01 | CARGNNDYKLSF | CASSATLQGGGYTF | 1 | 1 |
| ND01/ND02 1584/52 | ND01 | CILRDAFGNEKLTF CILRDAFGNEKLTF CAGHNNAGNMLTF |
CSARRDLGNQPQHF CSARRDLGNQPQHF |
2 | 1 |
| ND01/ND02 247 | ND01 | CAAMNTGGFKTIF | CASSELSSGRNNEQFF | 1 | 1 |
| ND01/ND02 248 | ND01 | CAVGAGYGGATNKLIF | CASSRGVTEAFF | 1 | 1 |
| ND01/ND02 257 | ND01 | CALMNTGFQKLVF CSLRYSGAGSYQLTF |
CASSFGLRQGGRVGEEYF | 1 | 1 |
| ND01/ND02 1878/44 | ND01 | CASQRGSQGNLIF CALNTGTASKLTF CALNTGTASKLTF |
CASSSGLAGGLEQYF CASSSGLAGGLEQYF |
1 | 1 |
| ND01/ND02 190 | ND01 | CALRDTGGFKTIF | CASSAGTGGLFGELFF | 1 | 1 |
| ND01/ND02 199 | ND01 | CAVASNTGKLIF | CSVEDSGNTIYF | 1 | 1 |
| ND01/ND02 205 | ND01 | CALSSQGTYKYIF CAGVFMRF |
CASSETGRGIEQYF | 1 | 1 |
| ND01/ND02 207 | ND01 | CATHASGGSYIPTF | CASKNQGTYGYTF | 1 | 1 |
| ND01/ND02 209 | ND01 | CAVGIAGNTPLVF | CASSPSWDFHGYTF | 1 | 1 |
| ND01/ND02 64 | ND01 | CAVPNQAGTALIF | CASSQRGTYEQYF | 2 | 1 |
| ND01/ND02 65 | ND01 | CATDTSYTGANSKLTF | CASSRILTSGNRGVTQYF | 2 | 1 |
| ND01/ND02 67 | ND01 | CAVGVSGNTPLVF | CASSVLSGGETQYF | 1 | 2 |
| ND01/ND02 75 | ND01 | CVVSDRDTGFQKLVF | CASSVAGSVSDTQYF | 2 | 1 |
| ND01/ND02 77 | ND01 | CALISGGGADGLTF | 1 | 1 | |
| ND01/ND02 78 | ND01 | CVVGDFGNEKLTF | CASSLVQAYYSGNTIYF | 2 | 1 |
| ND01/ND02 79 | ND01 | CALSGGGSARQLTF | CASSSSLRRFNYGYTF | 2 | 1 |
| ND01/ND02 82 | ND01 | CAFRGTGNQFYF | CASSITGTTYEQYF | 1 | 2 |
| ND01/ND02 83 | ND01 | CAGRSGGYQKVTF | CSVERRGGDTQYF | 1 | 2 |
| ND01/ND02 91 | ND01 | CAVIPMNSGYSTLTF | CASSPRPQGQSYNEQFF | 2 | 1 |
| ND01/ND02 92 | ND01 | CAVGPWGNEKLTF | CASSLDSKPEAFF | 2 | 1 |
| ND01/ND02 94 | ND01 | CAASLGAGSYQLTF | CSARGAGGLTYEQYF | 1 | 2 |
| ND01/ND02 98 | ND01 | CAASIRSGTYKYIF | CASSLRLTGGNNEQFF | 2 | 1 |
| ND01/ND02 99 | ND01 | CAANDQTGANNLFF | CASRKAGGPYEQYF | 1 | 2 |
| ND01/ND02 | ND02 | CASSPQGGSEKLVF | CASSFFRGRNTEAFF | 1 | 2 |
| ND01/ND02 8 | ND02 | CAVYSGNTPLVF | CASKAQGPGNTIYF | 3 | 7 |
| ND01/ND02 81 | ND02 | CAVGQQGGSEKLVF | CASRSPRDRNTEAFF | 2 | 2 |
| ND01/ND02 194 | ND02 | CAASRDTGFQKLVF | CASSRTGRTDQPQHF | 1 | 1 |
| ND01/ND02 196 | ND02 | CAMREGPNDYKLSF | CSARDFLRLAGGEETQYF | 1 | 1 |
| ND01/ND02 200 | ND02 | CAVGTQGGSEKLVF | CASRSNRDRNTEAFF | 1 | 1 |
| ND01/ND02 362 | ND02 | CIVGYSTLTF | CASSLARLVAGGDNEQFF | 1 | 1 |
Sequences highlighted in red correspond to those listed in the JDRF npod TCR database.