. 2021 Jul 12;95(15):e00294-21. doi: 10.1128/JVI.00294-21

TABLE 3.

Detailed information on RNA-seq libraries from IAV-, RSV-, or MERS-infected cells used in this study^a

Accession no.	Sample annotation	GEO/SRA data set	Library size^b	No. of reads mapped to:		Ratio of reads mapped to virus/total mapped reads (%)^c	No. of chimeric reads	Ratio of chimeric reads/reads mapped to virus (%)^d
Accession no.	Sample annotation	GEO/SRA data set	Library size^b	Human genome	virus	Ratio of reads mapped to virus/total mapped reads (%)^c	No. of chimeric reads	Ratio of chimeric reads/reads mapped to virus (%)^d
GSM4432396	A549_IAV	GSE147507	13,418,279	9,503,073	1,517,013	13.77	235	0.02
GSM4432397	A549_IAV	GSE147507	4,464,185	2,318,324	291,465	11.17	102	0.03
GSM4432392	A549_RSV	GSE147507	11,230,884	9,155,717	95,783	1.04	1,349	1.41
GSM4432393	A549_RSV	GSE147507	6,420,293	5,326,409	38,429	0.72	663	1.73
GSM4462357	A549_RSV	GSE147507	18,265,188	13,991,448	2,173,813	13.45	719	0.03
GSM4462358	A549_RSV	GSE147507	10,113,566	7,168,172	1,664,353	18.84	1,487	0.09
GSM4462359	A549_RSV	GSE147507	17,024,730	12,665,503	2,395,363	15.90	1,811	0.08
SRR10357369	Calu3_MERS	GSE139516	41,727,622	35,420,732	2,318,768	6.14	1,599	0.07
SRR10357370	Calu3_MERS	GSE139516	39,671,252	33,878,259	2,167,867	6.01	2,491	0.11
SRR10357371	Calu3_MERS	GSE139516	44,724,750	38,097,990	2,381,305	5.88	1,998	0.08
GSM4462367	NHBE_IAV	GSE147507	43,108,363	29,007,597	2,143,637	6.88	2,763	0.13
GSM4462368	NHBE_IAV	GSE147507	10,822,990	6,785,007	458,523	6.33	864	0.19
GSM4462369	NHBE_IAV	GSE147507	9,991,901	7,432,860	1,178,928	13.69	7,165	0.61
GSM4462370	NHBE_IAV	GSE147507	5,174,748	3,790,576	655,191	14.74	1,649	0.25

The library size and the total number of reads mapped to the human genome, virus genome, or human-virus chimeric reads are reported.

Library size is the total number of reads in the RNA-seq library.

(No. of reads mapped to virus/total no. of mapped reads) × 100.

(No. of chimeric reads/no. of reads mapped to virus) × 100.