TABLE 1.
Gene | Strain | Segment identity (%)a |
|||
---|---|---|---|---|---|
H1N1-NC | H1N2-NC | H1N1-MN | H3N2-NC | ||
PB2 | H1N1-NC | 100 | |||
H1N2-NC | 97 | 100 | 97 | ||
H1N1-MN | 96 | 97 | 100 | 97 | |
H3N2-NC | 98 | 100 | |||
PB1 | H1N1-NC | 100 | |||
H1N2-NC | 46 | 100 | 98 | ||
H3N2-NC | 46 | 100 | |||
PA | H1N1-NC | 100 | |||
H1N2-NC | 93 | 100 | 93 | ||
H3N2-NC | 99 | 100 | |||
HA | H1N1-NC | 100 | |||
H1N2-NC | 78 | 100 | 52 | ||
H1N1-MN | 93 | 76 | 100 | 51 | |
H3N2-NC | 56 | 100 | |||
NP | H1N1-NC | 100 | |||
H1N2-NC | 94 | 100 | 93 | ||
H1N1-MN | 25 | 25 | 100 | 25 | |
H3N2-NC | 97 | 100 | |||
NA | H1N1-NC | 100 | |||
H1N2-NC | 94 | 100 | 93 | ||
H1N1-MN | 25 | 25 | 100 | 25 | |
H3N2-NC | 97 | 100 | |||
M1 | H1N1-NC | 100 | |||
H1N2-NC | 98 | 100 | 98 | ||
H1N1-MN | 24 | 24 | 100 | 24 | |
H3N2-NC | 99 | 100 | |||
NS1/NS2 | H1N1-NC | 100 | |||
H1N2-NC | 98 | 100 | 97 | ||
H1N1-MN | 26 | 27 | 100 | 26 | |
H3N2-NC | 98 | 100 |
Percent identities between each segment among the SIV used in the study were calculated using SIAS (74).