TABLE 1.
Summary of currently available tools and the proposed method, for analysis of root images and the respective traits provided.
| Software or Solution | Automation | Identification and separation of adventitious root | Adventitious root reconstruction | Trait provided (7) |
References | |||||
| ARL | DIA | LRN | LLRL | TNN | PNN | |||||
| ARIA | Automatic | +(1) | - | + | +(2) | - | - | - | - | Pace et al. (2014) |
| DART | Manuel | + | - | + | + | + | - | - | - | Le Bot et al. (2010) |
| EZ-Rhizo | Semi-auto | + | - | + | - | + | - | - | - | Armengaud et al. (2009) |
| RootNav | Semi-auto | + | - | + | - | + | + | - | - | Pound et al. (2013) |
| RootReader2D | Semi-auto | + | - | + | - | + | - | - | Clark et al. (2013) | |
| Root System Analyzer | Automatic | +(3) | - | + | + | + | - | - | - | Leitner et al. (2014) |
| SmartRoot | Semi-auto | + | - | +(4) | + | + | - | - | Lobet et al. (2011) | |
| RootGraph | Automatic | + | +(5) | + | + | +(2) | - | - | Cai et al. (2015) | |
| RNQS | Automatic | +(6) | - | + | - | + | + | + | Remmler et al. (2014) | |
| WinRHIZO | Automatic | + | - | + | +(5) | - | - | - | Arsenault et al. (1995) | |
| Ascending Path | Automatic | + | + | + | + | + | + | +(8) | +(8) | Jeudy et al. (2016) |
For each available software, the table indicates the automation level, the possibility to identify and separate the adventitious root, to reconstruct the adventitious root and the trait provided.
(1)Dijkstra’s algorithm.
(2)Not detailed.
(3)Adventitious roots need manual initialization.
(4)Requires manual labeling of root types.
(5)Average value.
(6)Destructive method: requires to get out roots from the substrate.
(7)ARL: Adventitious Root Length; DIA: Diameter of the adventitious root; LRN: Lateral Root Number; LLRL: Longest Lateral Root Length; TNN: Total Number of Nodules; PNN: Primary Nodule Number.
(8)These traits have no biological significance for grapevine since it does not make such symbiosis.