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. 2021 Jun 29;12:638688. doi: 10.3389/fpls.2021.638688

TABLE 1.

Summary of currently available tools and the proposed method, for analysis of root images and the respective traits provided.

Software or Solution Automation Identification and separation of adventitious root Adventitious root reconstruction Trait provided (7)
References
ARL DIA LRN LLRL TNN PNN
ARIA Automatic +(1) - + +(2) - - - - Pace et al. (2014)
DART Manuel + - + + + - - - Le Bot et al. (2010)
EZ-Rhizo Semi-auto + - + - + - - - Armengaud et al. (2009)
RootNav Semi-auto + - + - + + - - Pound et al. (2013)
RootReader2D Semi-auto + - + - + - - Clark et al. (2013)
Root System Analyzer Automatic +(3) - + + + - - - Leitner et al. (2014)
SmartRoot Semi-auto + - +(4) + + - - Lobet et al. (2011)
RootGraph Automatic + +(5) + + +(2) - - Cai et al. (2015)
RNQS Automatic +(6) - + - + + + Remmler et al. (2014)
WinRHIZO Automatic + - + +(5) - - - Arsenault et al. (1995)
Ascending Path Automatic + + + + + + +(8) +(8) Jeudy et al. (2016)

For each available software, the table indicates the automation level, the possibility to identify and separate the adventitious root, to reconstruct the adventitious root and the trait provided.

(1)Dijkstra’s algorithm.

(2)Not detailed.

(3)Adventitious roots need manual initialization.

(4)Requires manual labeling of root types.

(5)Average value.

(6)Destructive method: requires to get out roots from the substrate.

(7)ARL: Adventitious Root Length; DIA: Diameter of the adventitious root; LRN: Lateral Root Number; LLRL: Longest Lateral Root Length; TNN: Total Number of Nodules; PNN: Primary Nodule Number.

(8)These traits have no biological significance for grapevine since it does not make such symbiosis.