Table 1.
Effects of the variants (SNVs and INDEL) identified in the genomic regions with true signatures of selection for VE of LS
Effect | Total |
---|---|
Upstream | 10,925 |
Downstream | 10,309 |
Intergenic | 122,789 |
3ʹUTR | 434 |
5ʹUTR | 170 |
Intron | 81,536 |
Splicing | 156 |
Synonymous | 657 |
Missense | 368 |
Frameshift | 38 |
Inframe | 20 |
ncRNA exon | 443 |
Stop gained | 8 |
Start lost | 2 |
A variant can affect more than one gene because they can share their DNA sequence, thus although the total number of variants identified was equal to 212,845, a total of 227,855 effects were found