Table 2.
Summary of GWAS peaks detected in ALL, Clades, and Subpopulations
| Populations | Unique Peaks | TOTAL | |
|---|---|---|---|
| Root | Shoot | Root + Shoot | |
| ALL + Clades | |||
| ALL | 34 | 20 | 54 |
| ALL/JAPONICA | 11 | 3 | 14 |
| ALL/INDICA | 1 | 0 | 1 |
| ALL/JAPONICA/INDICA | 0 | 1 | 1 |
| JAPONICA | 6 | 3 | 9 |
| INDICA | 2 | 2 | 4 |
| Sub-total unique peaks | 54 | 29 | 83 |
| Subpopulations* | |||
| aus | 9 | 2 | 11 |
| indica | 4 | 2 | 6 |
| tropical japonica | 7 | 1 | 8 |
| temperate japonica | 4 | 2 | 6 |
| Sub-total unique peaks | 24 | 7 | 31 |
| Grand Total Unique Peaks | 78 | 36 | 114 |
*Subpopulation peaks shown here represent only those uniquely detected by subpopulation-specific analyses; in addition, 20 of the peaks reported for ALL + Clades were supported by subpopulation peaks (aus = 5; indica = 3; tropical japonica = 11; temperate japonica = 1), as detailed in Suppl. Table S-1 and Suppl. Table S-2