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. Author manuscript; available in PMC: 2022 Jan 1.
Published in final edited form as: Cancer Res. 2021 Apr 28;81(13):3580–3592. doi: 10.1158/0008-5472.CAN-20-2773

KEY RESOURCES

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
rabbit anti-TAZ Cell Signaling Technology # 4883
mouse anti-Actin Sigma-Aldrich # A1978
rabbit anti-TBP Cell Signaling Technology # 40059
rabbit anti-YAP Cell Signaling Technology # 14074
rabbit anti-phospho-LATS1 Cell Signaling Technology # 9157
rabbit anti-LATS1 Cell Signaling Technology # 9153
rabbit anti-phospho-STAT3 Cell Signaling Technology # 9145
mouse anti-STAT3 Cell Signaling Technology # 9139
rabbit anti-phospho-ERK1/2 Cell Signaling Technology # 4370
mouse anti-ERK1/2 Cell Signaling Technology # 4696
rabbit anti-phospho-AKT Cell Signaling Technology # 4060
mouse anti-AKT Cell Signaling Technology # 2920
rabbit anti-EGFR Cell Signaling Technology # 4267
rabbit anti-phospho-EGFR Cell Signaling Technology # 2231
rabbit anti-PDGFRβ Cell Signaling Technology # 3169
rabbit anti-phospho-PDGFRβ Cell Signaling Technology # 3166
Rabbit anti-phospho-FGFR1–4 R&D # AF3285-SP
Rabbit anti-FGFR1 Cell Signaling Technology # 9740
rabbit anti-phospho-MET Cell Signaling Technology # 3077
rabbit anti-MET Cell Signaling Technology # 8198
rabbit anti-JUN Cell Signaling Technology # 9165
rabbit anti-CD274 Cell Signaling Technology # 13684
rabbit anti-CXCR4 Thermo Fisher # 35–8800
rabbit anti-HIF1A Cell Signaling Technology # 36169
rabbit anti-JAK2 Cell Signaling Technology # 3230
rabbit anti-PDGFRA Cell Signaling Technology # 3174
rabbit anti-TEAD1 Cell Signaling Technology #12292
mouse anti-FLAG HRP Sigma-Aldrich # A8592
Rabbit anti-Ki67 Cell Signaling Technology #9129
mouse anti-human Nuclei Millipore #MAB1281
rabbit anti-STAT3 (ChIP) Cell Signaling Technology # 12640
rabbit IgG (ChIP) Cell Signaling Technology # 2729
Bacterial and Virus Strains
STBL3 Competent E. coli Thermo Fisher C737303
Chemicals, Peptides, and Recombinant Proteins
Osimertinib (0.5μM for screening) Medkoo # 206042
AEE788 (0.05μM for screening) Cayman # 18416
PF299804 (0.1μM for screening) Cayman # 9001879
Lapatinib (0.2μM for screening) Medkoo # 100490A
BPI-2009 (10μM for screening) Medkoo # 205897
Lazertinib (0.1μM for screening) Medkoo # 206860
Lidocaine hydrochloride (1mM for screening) Selleckchem # S4667
Erlotinib (10μM for screening) Cell Signaling Technology # 5083
Gefitinib (10μM for screening) Cell Signaling Technology # 4765
JNJ-42756493 (0.05μM for screening) Cayman # 21813
Sunitinib (1μM for screening) Cayman # 13159
Sorafenib (1μM for screening) Cayman # 10009644
5,15-DPP Santa Cruz # sc-204305
Stattic Santa Cruz # sc-202818
PD98059 Cell Signaling Technology # 9900
FR180204 Sigma-Aldrich # SML0320
Akti-1/2 Tocris # 5773
Critical Commercial Assays
Trans-Lentiviral Packaging System Thermo Fisher TLP4614
PDGFβ ELISA Kit R&D Systems DBB00
EGF ELISA Kit R&D Systems DEG00
alamarBlue Cell Viability Reagent Thermo Fisher DAL1025
Illumina TrueSeq RNA Sample Preparation kit v2 Illumina RS-122–2001
ChIP-Seq DNA Sample Prep kit Illumina IP-202–1012
MAGnify ChIP system Thermo Fisher 492024
RNeasy kit Qiagen 74104
Deposited Data
ChIP-seq datasets This paper GEO GSE151994
RNA-seq datasets This paper GEO GSE151995
Experimental Models: Cell Lines
GBM1B, GBM1A Dr. Vescovi (Galli et al., 2004)
M1123 (1123) Dr. Nakano (Mao et al., 2013)
U87MG ATCC HTB-14
A172 ATCC CRL 1620
293FT Thermo Fisher R70007
Experimental Models: Organisms/Strains
NOD/SCID mice (female, 6–8 weeks) Jackson Laboratory 001303
Oligonucleotides
Primers for qRT-PCR, see below This paper
Primers for ChIP-PCR, see below This paper
Recombinant DNA
pLEX-MCS lentiviral vector Thermo Scientific OHS4735
GCGATGAATCAGCCTCTGAAT (shTAZ1 lentiviral shRNA vector) Sigma-Aldrich TRCN0000019469
CCAGGAACAAACGTTGACTTA (shTAZ2 lentiviral shRNA vector) Sigma-Aldrich TRCN0000019470
pLKO.1-puro TurboGFP Control shRNA Lentiviral Vector Sigma-Aldrich SHC004
EGFRvIII ORF Dr. Alonzo Ross Addgene #20737
TAZ ORF Dr. Kunliang Guan Addgene #32839
Software and Algorithms
Bowtie2 Langmead and Salzberg, 2012
MACS2 Zhang et al., 2008
BEDTools Lawrence et al., 2013
CisGenome Ji et al., 2008
HOMER Heinz et al., 2010
Primers
qRT-PCR
Gene Primer 5’ Primer 3’
TAZ GATCCTGCCGGAGTCTTTCTT CACGTCGTAGGACTGCTGG
CTGF CCAATGACAACGCCTCCTG TGGTGCAGCCAGAAAGCTC
MYC CCTGGTGCTCCATGAGGAGAC CAGACTCTGACCTTTTGCCAGG
18s ACAGGATTGACAGATTGATAGCTC CAAATCGCTCCACCAACTAAGAA
EGFR AACACCCTGGTCTGGAAGTACG TCGTTGGACAGCCTTCAAGACC
PDGFB GAGATGCTGAGTGACCACTCGA GTCATGTTCAGGTCCAACTCGG
EGF TGCGATGCCAAGCAGTCTGTGA GCATAGCCCAATCTGAGAACCAC
PDGFRA GACTTTCGCCAAAGTGGAGGAG AGCCACCGTGAGTTCAGAACGC
PDGFA CAGCGACTCCTGGAGATAGACT CGATGCTTCTCTTCCTCCGAATG
VEGFA TTGCCTTGCTGCTCTACCTCCA GATGGCAGTAGCTGCGCTGATA
FGF2 AGCGGCTGTACTGCAAAAACGG CCTTTGATAGACACAACTCCTCTC
FGF1 ATGGCACAGTGGATGGGACAAG TAAAAGCCCGTCGGTGTCCATG
FGFR4 AACACCGTCAAGTTCCGCTGTC CATCACGAGACTCCAGTGCTGA
ERBB3 CTATGAGGCGATACTTGGAACGG GCACAGTTCCAAAGACACCCGA
JUN CCTTGAAAGCTCAGAACTCGGAG TGCTGCGTTAGCATGAGTTGGC
HIF1A TATGAGCCAGAAGAACTTTTAGGC CACCTCTTTTGGCAAGCATCCTG
JAK2 CCAGATGGAAACTGTTCGCTCAG GAGGTTGGTACATCAGAAACACC
CXCR4 CTCCTCTTTGTCATCACGCTTCC GGATGAGGACACTGCTGTAGAG
CD274 TGCCGACTACAAGCGAATTACTG CTGCTTGTCCAGATGACTTCGG
TEAD1 CCTGGCTATCTATCCACCATGTG TTCTGGTCCTCGTCTTGCCTGT
ChIP-PCR
Gene Primer 5’ Primer 3’
EGFR CGTCCTTTCCTGTTTCCTTG GGGGAAAGTGAGGGAAGAAA
PDGFB ACTGAATGGGCAAAAACTGG TGCAAACAGGGACAATTTGA
EGF TATTGGCTGTGGGTTTGTCA ACCATGATCAAGTGGGCTTC
PDGFRA CAGGTGGATTGCTTGAGGTC CTTGAGTGCAATGGCATGAT
PDGFA CTGAGCCCAGAGTCAGGTTC GGAGTAGCGACTGCATGTGA
VEGFA CCAACTTCTGGGCTGTTCTC CCCCTCTCCTCTTCCTTCTC
FGF2 ATGATGACAATGGCGGTTTT GGATCCCAAGGCAGAAGAAT
FGF1 TGCCTTTTGCCTTTGACTCT ATGGAGGAGCTGAGCTTTGA
FGFR4 CCCAGAGCCAGTTCACAAAC CGAGTAAGGAGCTTGGCAGT
ERBB3 GTTGGGGGTAAGGTCACAGA GAATAGAAAGGCGGGAAAGG
HIF1A CATCACTGGCCATCAGAGAA TGGCTGGGTCAAATGGTATT
JAK2 AAATGGTGCTGGGAAAACTG GCCATTGCTTTTGGTGTTTT
CXCR4 TTCTGGGCTTCAAGCAACTT AAACGCGCCAAGTGATAAAC
CD274 CAGCACCTGTTGTTTCCTGA GGGCGAAGGATATGAACAGA
TEAD1 GTCCTGGCGTTCATTTCATT AGTCTGCAAAGTGCTTGGTG
Negative Control NC1 GTCTGTACTCCCAGCTACTC GACAGAGCAAGACTCCATC
Negative Control NC2 GACTGGTTCATTCACTGCTC CACTTCCCTACCCGAAAC
STAT3 ChIP-PCR TCCTCTTCCTCCTCCTCCTC AAAGGAATGCAGATGCAGGT