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. 2021 Jul 5;7(7):e07466. doi: 10.1016/j.heliyon.2021.e07466

Table 1.

Constraints and parameters utilized to model and simulate the LAPD-model of MHC1-mediated export of high affinity peptides.

S. No. Name Parameter Quantity
1 Range of numerical values utilized for disassociation constants Kd [10−6,1.00]
2 Proportion of empirically observed MHC1 [eM1β][rM1β] ≈5.00
3 Fold difference between low- and high-affinity peptides Log(#Lp#Hp) ≈5.00
4 Rate limiting step (shunt reaction) k18 30 − 35 mol L−1 s−1
5 Total number of reactions RXN 30
Total number of forward reactions RXNf 15
Total number of backward reactions RXNb 15
6 Index of molecular entity i 18
7 Number of in silico experiments j 3
8 Number of independent runs or observations h 30
9 Number of molecules of an entity per in silico experiment in an independent run or observation yijh
10 Wall time of each independent run or observation 600 s
11 Time units tf 100
12 Degree of freedom df 28
13 Simulation time to assess temporal variation of molecular entity t [60 s,900 s]