Antibodies |
|
anti-human/anti-mouse CX43 |
Abcam |
Cat #ab11370; AB_297976 |
anti-human XBP1s |
Cell Signaling |
Cat #12782S; AB_2687943 |
anti-human/anti-mouse/anti-canine Vinculin |
Sigma |
Cat #V9131; AB_477629 |
anti-canine CX43 |
Thermo Fisher Scientific |
Cat #13-8300; AB_2533038 |
Anti-human CHOP |
Cell Signaling |
Cat # 2895S; AB_2089254 |
Anti-mouse CD8 (clone YTS 169.4) |
BioXcell |
Cat # 53-0341-82; RRID:AB_2866440
|
Anti-mouse CD4 (clone GK1.5) |
BioXcell |
Cat # 560230; RRID:AB_1645200
|
rat IgG2a anti-trinitrophenol (clone 2A3) |
BioXcell |
Cat # ab185230; RRID:AB_2715497
|
Fixable Viability Stain 510 |
BD Biosciences |
Cat # 564406; RRID:AB_2869572
|
Goat anti-canine IgG (H+L) FITC |
Invitrogen |
Cat # A18764; RRID:AB_2535541
|
Anti-Human PAN HLA |
InVivoMab |
Cat #BE0079; RRID:AB_1107730
|
Anti-Human HLA-A∗02:01 PE |
Biolegend |
Cat # 343306; RRID:AB_1877227
|
Anti-human CD3 V450 |
BD Biosciences |
Cat # 560366; RRID:AB_1645569
|
Anti-human CD8 PerCP |
Biolegend |
Cat # 344708; RRID:AB_1967149
|
Anti-human CD4 FITC |
BD Biosciences |
Cat # 555346; RRID:AB_395751
|
Anti-human IFNγ APC |
BD Biosciences |
Cat # 551385; RRID:AB_398505
|
Anti-human CD107a PE-Cy7 |
Biolegend |
Cat # 328618; RRID:AB_11147955
|
|
Bacterial and virus strains |
|
S. typhimurium SL3261AT |
This paper |
N/A |
Vivofit® (Thyphoid vaccine live oral Ty21a) |
This paper |
N/A |
|
Biological samples |
|
PBMC isolation from Buffycoat (approved by the Ethics Committee of Humanitas Clinical and Research Center License No. Humanitas01/2016) |
Humanitas Clinical and Research Center |
N/A |
|
Chemicals, peptides, and recombinant proteins |
|
Heptanol |
Sigma-Aldrich |
Cat # 51778 |
MG132 |
Sigma-Aldrich |
Cat # 474790 |
4μ8c |
Sigma-Aldrich |
Cat # 412512 |
Brefeldin A |
Biolegend |
Cat # 420601 |
Thapsigargin |
Sigma-Aldrich |
Cat # T9033 |
Freund’s Incomplete Adjuvant (IFA) |
Sigma-Aldrich |
Cat # F5506 |
Aldara 5% Cream (Imiquimod) |
Meda AB |
N/A |
ODN1826 |
Invivogen |
Cat # vac-1826-1 |
Epoxomycin |
Sigma-Aldrich |
Cat # E3652 |
CMV peptide |
JPT Peptide Technologies |
Cat# PM-PP65-1 |
Mart126-35
|
Iba Lifesciences |
Cat# 6-7007-901 |
IL2 (Proleukin) |
Clinigen Healthcare B.V. |
N/A |
RIPA |
Cell Signaling |
Cat # 9806S |
Phosphatase Inhibitor |
Sigma-Aldrich |
Cat # P5726 |
Protease Inhibiotors |
Roche |
Cat # 05892988001 |
Gentamicin Sulfate |
Euroclone |
Cat# ECM0012B |
Concanavalin A |
Sigma-Aldrich |
Cat# C2010 |
|
Critical commercial assays |
|
CellTiter-Glo Luminescent Cell Viability Assay |
Promega |
Cat # G7572 |
DuoSet ELISA human IFNg |
R&D Systems |
Cat # DY285B |
DuoSet ELISA mouse IL-2 |
R&D Systems |
Cat # DY402; RRID:AB_2797392
|
Canine IFNγ ELISA |
R&D Systems |
Cat # CAIF00 |
PE Annexin V Apoptosis Detection Kit I |
BD PharMingen |
Cat # 559763; RRID:AB_2869265
|
SPE C18 devices |
Macherey-Nagel |
Cat# MANA730003.250 |
T Cell TransAct |
Miltenyi Biotec |
Cat #130-111-160 |
Delfia-BATDA |
Perkin Elmer |
Cat # AD0116 |
fluorometric proteasome 20S assay kit |
Sigma-Aldrich |
Cat # MAK172-1KT |
XbpI human gene knockout kit |
Origene |
Cat# KN401959
|
XbpI mouse gene knockout kit |
Origene |
Cat# KN519483
|
G’NOME DNA isolation kit |
MPBiomedicals |
Cat # 112010600 |
Direct-zol RNA MiniPrep Plus Kit |
Zymo Research |
Cat# R2072 |
|
Deposited data |
|
Original data, Peptidomic Datasets, R-scripts |
This paper |
Zenodo Repository https://zenodo.org/record/4738409#.YJJEIqHONaQ |
|
Experimental models: cell lines |
|
B16F10 |
Saccheri et al., 2010 |
N/A |
B16F10-XBP1KO |
This paper |
N/A |
B16F10-OVA |
Saccheri et al., 2010 |
N/A |
B16F10-OVA-CX43KO |
Saccheri et al., 2010 |
N/A |
B3Z-Hybridoma |
Rotta et al., 2003 |
N/A |
DC1 |
Rotta et al., 2003 |
N/A |
624-38 |
Sabatino et al., 2008 |
N/A |
624-38 XBP1KO |
This paper |
N/A |
624-28 |
Sabatino et al., 2008 |
N/A |
HT29 |
This paper |
N/A |
SkMel24 |
Saccheri et al., 2010 |
N/A |
A375 |
This paper |
ATCC-CRL-1619; RRID:CVCL_0132 |
MeWo |
This paper |
ATCC-HTB-65; RRID:CVCL_0445 |
C32 |
This paper |
ATCC-CRL-1585; RRID:CVCL_1097 |
hMel2 |
This paper |
N/A |
hMel3 |
This paper |
N/A |
T2 |
This paper |
N/A |
THP1 |
This paper |
N/A |
Mela23, Mela41 |
This paper |
N/A |
|
Experimental models: organisms/strains |
|
Mouse: C57BL/6J |
Charles River |
Cat # 027 |
Mouse: C57BL/6-Tg(TcraTcrb)1100Mjb/Crl (OTI) |
Charles River |
Cat # 642 |
Mouse: NOD.Cg-Prkdcscid Il2rgtm1Wjl /SzJ (NSG) |
Jackson Laboratories |
Cat # 005557 |
|
Oligonucleotides |
|
Primers, see Table S3
|
This paper |
N/A |
|
Software and algorithms |
|
MaxQuant (version 1.5.5.1) |
MaxQuant |
https://www.maxquant.org/ |
Perseus (version 1.5.0.31) |
Perseus |
https://maxquant.net/perseus/ |
Image Lab |
Biorad |
http://www.bio-rad.com/en-us/product/image-lab-software?ID=KRE6P5E8Z |
FlowJo v10.5.3 |
TreeStar |
https://www.flowjo.com/solutions/flowjo; RRID:SCR_008520 |
Prism |
GraphPad |
https://www.graphpad.com:443/ |
|
Other |
|
Count Bright Absolute Counting Beads |
Invitrogen |
Cat # C36950
|