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. 2021 Jul 6;36(1):109312. doi: 10.1016/j.celrep.2021.109312
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

anti-human/anti-mouse CX43 Abcam Cat #ab11370; AB_297976
anti-human XBP1s Cell Signaling Cat #12782S; AB_2687943
anti-human/anti-mouse/anti-canine Vinculin Sigma Cat #V9131; AB_477629
anti-canine CX43 Thermo Fisher Scientific Cat #13-8300; AB_2533038
Anti-human CHOP Cell Signaling Cat # 2895S; AB_2089254
Anti-mouse CD8 (clone YTS 169.4) BioXcell Cat # 53-0341-82; RRID:AB_2866440
Anti-mouse CD4 (clone GK1.5) BioXcell Cat # 560230; RRID:AB_1645200
rat IgG2a anti-trinitrophenol (clone 2A3) BioXcell Cat # ab185230; RRID:AB_2715497
Fixable Viability Stain 510 BD Biosciences Cat # 564406; RRID:AB_2869572
Goat anti-canine IgG (H+L) FITC Invitrogen Cat # A18764; RRID:AB_2535541
Anti-Human PAN HLA InVivoMab Cat #BE0079; RRID:AB_1107730
Anti-Human HLA-A02:01 PE Biolegend Cat # 343306; RRID:AB_1877227
Anti-human CD3 V450 BD Biosciences Cat # 560366; RRID:AB_1645569
Anti-human CD8 PerCP Biolegend Cat # 344708; RRID:AB_1967149
Anti-human CD4 FITC BD Biosciences Cat # 555346; RRID:AB_395751
Anti-human IFNγ APC BD Biosciences Cat # 551385; RRID:AB_398505
Anti-human CD107a PE-Cy7 Biolegend Cat # 328618; RRID:AB_11147955

Bacterial and virus strains

S. typhimurium SL3261AT This paper N/A
Vivofit® (Thyphoid vaccine live oral Ty21a) This paper N/A

Biological samples

PBMC isolation from Buffycoat (approved by the Ethics Committee of Humanitas Clinical and Research Center License No. Humanitas01/2016) Humanitas Clinical and Research Center N/A

Chemicals, peptides, and recombinant proteins

Heptanol Sigma-Aldrich Cat # 51778
MG132 Sigma-Aldrich Cat # 474790
4μ8c Sigma-Aldrich Cat # 412512
Brefeldin A Biolegend Cat # 420601
Thapsigargin Sigma-Aldrich Cat # T9033
Freund’s Incomplete Adjuvant (IFA) Sigma-Aldrich Cat # F5506
Aldara 5% Cream (Imiquimod) Meda AB N/A
ODN1826 Invivogen Cat # vac-1826-1
Epoxomycin Sigma-Aldrich Cat # E3652
CMV peptide JPT Peptide Technologies Cat# PM-PP65-1
Mart126-35 Iba Lifesciences Cat# 6-7007-901
IL2 (Proleukin) Clinigen Healthcare B.V. N/A
RIPA Cell Signaling Cat # 9806S
Phosphatase Inhibitor Sigma-Aldrich Cat # P5726
Protease Inhibiotors Roche Cat # 05892988001
Gentamicin Sulfate Euroclone Cat# ECM0012B
Concanavalin A Sigma-Aldrich Cat# C2010

Critical commercial assays

CellTiter-Glo Luminescent Cell Viability Assay Promega Cat # G7572
DuoSet ELISA human IFNg R&D Systems Cat # DY285B
DuoSet ELISA mouse IL-2 R&D Systems Cat # DY402; RRID:AB_2797392
Canine IFNγ ELISA R&D Systems Cat # CAIF00
PE Annexin V Apoptosis Detection Kit I BD PharMingen Cat # 559763; RRID:AB_2869265
SPE C18 devices Macherey-Nagel Cat# MANA730003.250
T Cell TransAct Miltenyi Biotec Cat #130-111-160
Delfia-BATDA Perkin Elmer Cat # AD0116
fluorometric proteasome 20S assay kit Sigma-Aldrich Cat # MAK172-1KT
XbpI human gene knockout kit Origene Cat# KN401959
XbpI mouse gene knockout kit Origene Cat# KN519483
G’NOME DNA isolation kit MPBiomedicals Cat # 112010600
Direct-zol RNA MiniPrep Plus Kit Zymo Research Cat# R2072

Deposited data

Original data, Peptidomic Datasets, R-scripts This paper Zenodo Repository https://zenodo.org/record/4738409#.YJJEIqHONaQ

Experimental models: cell lines

B16F10 Saccheri et al., 2010 N/A
B16F10-XBP1KO This paper N/A
B16F10-OVA Saccheri et al., 2010 N/A
B16F10-OVA-CX43KO Saccheri et al., 2010 N/A
B3Z-Hybridoma Rotta et al., 2003 N/A
DC1 Rotta et al., 2003 N/A
624-38 Sabatino et al., 2008 N/A
624-38 XBP1KO This paper N/A
624-28 Sabatino et al., 2008 N/A
HT29 This paper N/A
SkMel24 Saccheri et al., 2010 N/A
A375 This paper ATCC-CRL-1619; RRID:CVCL_0132
MeWo This paper ATCC-HTB-65; RRID:CVCL_0445
C32 This paper ATCC-CRL-1585; RRID:CVCL_1097
hMel2 This paper N/A
hMel3 This paper N/A
T2 This paper N/A
THP1 This paper N/A
Mela23, Mela41 This paper N/A

Experimental models: organisms/strains

Mouse: C57BL/6J Charles River Cat # 027
Mouse: C57BL/6-Tg(TcraTcrb)1100Mjb/Crl (OTI) Charles River Cat # 642
Mouse: NOD.Cg-Prkdcscid Il2rgtm1Wjl /SzJ (NSG) Jackson Laboratories Cat # 005557

Oligonucleotides

Primers, see Table S3 This paper N/A

Software and algorithms

MaxQuant (version 1.5.5.1) MaxQuant https://www.maxquant.org/
Perseus (version 1.5.0.31) Perseus https://maxquant.net/perseus/
Image Lab Biorad http://www.bio-rad.com/en-us/product/image-lab-software?ID=KRE6P5E8Z
FlowJo v10.5.3 TreeStar https://www.flowjo.com/solutions/flowjo; RRID:SCR_008520
Prism GraphPad https://www.graphpad.com:443/

Other

Count Bright Absolute Counting Beads Invitrogen Cat # C36950