Table 3.
Nucleotide dissociation constants of WT and mutant F1
WT (βY331W) | + αE284C/γQ274C | + αE284C/γL276C | |||||||
---|---|---|---|---|---|---|---|---|---|
MgATP (μM) | Kd1 | Kd2 | Kd3 | Kd1 | Kd2 | Kd3 | Kd1 | Kd2 | Kd3 |
Reduction | < 0.01 | 6.0 (2.5) | 34 (17) | 0.66 (0.17) | 15 (5.5) | 93 (44) | < 0.01 | 10 (3.5) | 81 (35) |
R2 = 0.9614 | R2 = 0.9755 | R2 = 0.9554 | |||||||
Oxidation | < 0.01 | 7.6 (2.9) | 58 (28) | 3.0 (0.68) | 432 (105) | > 5000# | < 0.01 | 8.0 (2.2) | 140 (56) |
R2 = 0.9628 | R2 = 0.9207 | R2 = 0.9580 | |||||||
MgADP (μM) | Kd1 | Kd2 | Kd3 | Kd1 | Kd2 | Kd3 | Kd1 | Kd2 | Kd3 |
Reduction | 0.022 (0.0049) | 11 (12) | 16 (19) | 0.20 (0.041) | 19 (5.7) | 120 (47) | 0.025 (0.0035) | 7.3 (1.1) | 88 (18) |
R2 = 0.9843 | R2 = 0.9859 | R2 = 0.9891 | |||||||
Oxidation | 0.024 (0.0050) | 12 (7.5) | 24 (16) | 1.3 (0.34) | 160 (42) | > 5000# | 0.026 (0.0057) | 3.6 (0.84) | 76 (25) |
R2 = 0.9854 | R2 = 0.9408 | R2 = 0.9713 | |||||||
MgADP-AlF4 (μM) | Kd1 | Kd2 | Kd3 | Kd1 | Kd2 | Kd3 | Kd1 | Kd2 | Kd3 |
Reduction | < 0.01 | 0.39 (0.13) | 12 (4.9) | < 0.01 | 5.7 (1.2) | 42 (11) | < 0.01 | 3.9 (0.98) | 89 (30) |
R2 = 0.9289 | R2 = 0.9874 | R2 = 0.9665 | |||||||
Oxidation | < 0.01 | 0.22 (0.072) | 27 (11) | 0.035 (0.010) | 36 (9.9) | > 5000# | < 0.01 | 2.6 (0.82) | 83 (36) |
R2 = 0.9278 | R2 = 0.9207 | R2 = 0.9375 |
Nucleotide binding to the catalytic sites was measured at 25 °C by monitoring the fluorescence signal of residue βY331W. Nucleotide dissociation constants (Kd) were calculated by fitting theoretical curves to the experimental data by using a three-site binding model. The coefficient of determination (R2) for each regression is listed. The method applied was unable to resolve Kd values lower than 0.01 μM with confidence. In the underlying titrations, each data point was measured at least three times. The least-square fits to determine binding constants and statistical parameters were based on these individual data points (not on the average of each condition shown in Fig. 1). Standard errors for the Kd values are shown in parentheses.
This number was too high to be determined through current experimental method (Kd3 > 5 mM).