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. Author manuscript; available in PMC: 2022 Aug 15.
Published in final edited form as: Arch Biochem Biophys. 2021 May 12;707:108899. doi: 10.1016/j.abb.2021.108899

Table 3.

Nucleotide dissociation constants of WT and mutant F1

WT (βY331W) + αE284C/γQ274C + αE284C/γL276C

MgATP (μM) Kd1 Kd2 Kd3 Kd1 Kd2 Kd3 Kd1 Kd2 Kd3

Reduction < 0.01 6.0 (2.5) 34 (17) 0.66 (0.17) 15 (5.5) 93 (44) < 0.01 10 (3.5) 81 (35)
R2 = 0.9614 R2 = 0.9755 R2 = 0.9554

Oxidation < 0.01 7.6 (2.9) 58 (28) 3.0 (0.68) 432 (105) > 5000# < 0.01 8.0 (2.2) 140 (56)
R2 = 0.9628 R2 = 0.9207 R2 = 0.9580

MgADP (μM) Kd1 Kd2 Kd3 Kd1 Kd2 Kd3 Kd1 Kd2 Kd3

Reduction 0.022 (0.0049) 11 (12) 16 (19) 0.20 (0.041) 19 (5.7) 120 (47) 0.025 (0.0035) 7.3 (1.1) 88 (18)
R2 = 0.9843 R2 = 0.9859 R2 = 0.9891

Oxidation 0.024 (0.0050) 12 (7.5) 24 (16) 1.3 (0.34) 160 (42) > 5000# 0.026 (0.0057) 3.6 (0.84) 76 (25)
R2 = 0.9854 R2 = 0.9408 R2 = 0.9713

MgADP-AlF4 (μM) Kd1 Kd2 Kd3 Kd1 Kd2 Kd3 Kd1 Kd2 Kd3

Reduction < 0.01 0.39 (0.13) 12 (4.9) < 0.01 5.7 (1.2) 42 (11) < 0.01 3.9 (0.98) 89 (30)
R2 = 0.9289 R2 = 0.9874 R2 = 0.9665

Oxidation < 0.01 0.22 (0.072) 27 (11) 0.035 (0.010) 36 (9.9) > 5000# < 0.01 2.6 (0.82) 83 (36)
R2 = 0.9278 R2 = 0.9207 R2 = 0.9375

Nucleotide binding to the catalytic sites was measured at 25 °C by monitoring the fluorescence signal of residue βY331W. Nucleotide dissociation constants (Kd) were calculated by fitting theoretical curves to the experimental data by using a three-site binding model. The coefficient of determination (R2) for each regression is listed. The method applied was unable to resolve Kd values lower than 0.01 μM with confidence. In the underlying titrations, each data point was measured at least three times. The least-square fits to determine binding constants and statistical parameters were based on these individual data points (not on the average of each condition shown in Fig. 1). Standard errors for the Kd values are shown in parentheses.

#

This number was too high to be determined through current experimental method (Kd3 > 5 mM).