Table 1.
List of putative novel gene candidates (set 1) used for phylogenetics and details of symbiotic-role.
| Gene name (locus information) | Status in mycorrhized host | AM symbiosis associated role (known/ unknown) |
|---|---|---|
| 6-Phosphogluconate dehydrogenase decarboxylating (12:62087150–62088641) | Up-regulated | Unknown |
| AAA-ATPase At4g25835-like (1:81070083–81071866) | Down-regulated | Unknown |
| Ankyrin repeat PH and SEC7 domain containing protein secG-likea (9:66080841–66082224) | Down-regulated | C terminus domain of VAPYRIN (protein that is a part of the common symbiotic signalling pathway (CSSP))76 |
| GATA transcription factor (1:97046157–97047704) | Down-regulated | Unknown |
| Pathogenesis-related genes transcriptional activator PTI6 (6:48363699–48364446) | Down-regulated | Unknown |
| Probable LRR receptor-like serine/threonine-protein kinase At1g74360 (3:65257764–65261637) | Down-regulated | Ser/thr kinase is involved in peri-arbuscular membrane formation and ser/thr domain is present in signalling genes such as CCaMK77. However, LRR receptor ser/thr kinase function specific to AM symbiosis is still unknown |
| β-expansin (3:54655131–54656997) | Up-regulated | Arbuscule development68 |
| Putative calcium-binding protein CML45-like (2:50279342–50279888) | Down-regulated | Unknown |
| Scarecrow-like protein 5; scarecrow-like protein 13* (5:64111514–64112957) | Down-regulated | Scarecrow proteins are part of the GRAS transcription factors regulating extent of AM symbiosis in host roots78 |
| S-adenosyl-L-methionine: salicylic acid carboxyl methyltransferase (9:70802563–70805153) | Up-regulated | Unknown |
aDeviations from expected expression status observed in previously published literatures.