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. 2021 Jul 1;11:656421. doi: 10.3389/fcimb.2021.656421

Table 1.

Types of SELEX development processes.

S. No. Type Description Reference
1. Negative SELEX For removal of non-specific aptamers Ellington and Szostak, 1992
2. Counter SELEX For removal of cross-reactive aptamers by incubating them
targets obtained from related species
Jenison, 1994
3. Genomic SELEX For the identification of binding
motif present in the genome of an organism
Singer et al., 1997
4. In vivo SELEX Aptamers are generated in vivo, inside the cell and then
characterized
Coulter et al., 1997
5. Chimeric SELEX In this method, well- characterized aptamers are fused together so that the resulting aptamer can bind to different targets (one aptamer can recognise two or more different
targets)
Burke and Willis, 1998
6. Cell-SELEX For the development of aptamers which recognise markers present
in whole cell
Homann and Goringer, 1999
7. Indirect SELEX In this SELEX method, the
binding of aptamers with their targets are metal-ion dependent
Kawakami et al., 2000
8. Photo- SELEX In this method, nucleotides are light-sensitive and irradiation with UV rays is employed to select the specific aptamer-target
from the pool
Golden et al., 2000
9. Toggle SELEX For identification of cross- reactive aptamers by using toggled targets Bianchini et al., 2001
10. Tailored SELEX Aptamers often contain primer- hybridization site. Introduction of cleavable primer hybridization site in aptamers will select for primer-free-aptamers. Vater et al., 2003
11. CE (Capillary electrophoresis)- SELEX This process selects high affinity aptamers in a few cycles (2-4)
thus shortens the aptamer selection process
Mendonsa and Bowser, 2004; Mosing and Bowser, 2009
12. FluMag SELEX Targets are tagged with fluorophores Stoltenburg et al., 2005
13. Target expressed on cell surface- SELEX (TECS- SELEX) In this method, a cell is engineered to express a recombinant protein which will be used as target protein for
aptamer development
Ohuchi et al., 2006
14. Nanoselection based SELEX One step method to isolate
aptamers using fluorescence and atomic force microscopy
Peng et al., 2007
15. MonoLEX Column chromatography and pyrosequencing is used to select
specific aptamer sequences
Nitsche et al., 2007
16. Microfluidic SELEX Selection of aptamers are performed on a microfluidic chip Cho et al., 2010.
17. High- throughput SELEX In this method, high-throughput DNA sequencing and advanced bioinformatic analysis is coupled
for aptamers selection
Hoon et al., 2011
18. Particle display SELEX Flow cytometry based method for aptamer selection Wang et al., 2014
19. Hi-fidelity SELEX Digital-PCR is used to intensify
the SELEX selection and development
Ouellet et al., 2015
20. Isogenic cell SELEX Aptamers are first selected against targets overexpressed on isogenic cell line, then counter- selected against microRNA
mediated silencing of targets
Takahashi et al., 2016