Table 1.
S. No. | Type | Description | Reference |
---|---|---|---|
1. | Negative SELEX | For removal of non-specific aptamers | Ellington and Szostak, 1992 |
2. | Counter SELEX | For removal of cross-reactive aptamers by incubating them targets obtained from related species |
Jenison, 1994 |
3. | Genomic SELEX | For the identification of binding motif present in the genome of an organism |
Singer et al., 1997 |
4. | In vivo SELEX | Aptamers are generated in vivo, inside the cell and then characterized |
Coulter et al., 1997 |
5. | Chimeric SELEX | In this method, well- characterized aptamers are fused together so that the resulting aptamer can bind to different targets (one aptamer can recognise two or more different targets) |
Burke and Willis, 1998 |
6. | Cell-SELEX | For the development of aptamers which recognise markers present in whole cell |
Homann and Goringer, 1999 |
7. | Indirect SELEX | In this SELEX method, the binding of aptamers with their targets are metal-ion dependent |
Kawakami et al., 2000 |
8. | Photo- SELEX | In this method, nucleotides are light-sensitive and irradiation with UV rays is employed to select the specific aptamer-target from the pool |
Golden et al., 2000 |
9. | Toggle SELEX | For identification of cross- reactive aptamers by using toggled targets | Bianchini et al., 2001 |
10. | Tailored SELEX | Aptamers often contain primer- hybridization site. Introduction of cleavable primer hybridization site in aptamers will select for primer-free-aptamers. | Vater et al., 2003 |
11. | CE (Capillary electrophoresis)- SELEX | This process selects high affinity aptamers in a few cycles (2-4) thus shortens the aptamer selection process |
Mendonsa and Bowser, 2004; Mosing and Bowser, 2009 |
12. | FluMag SELEX | Targets are tagged with fluorophores | Stoltenburg et al., 2005 |
13. | Target expressed on cell surface- SELEX (TECS- SELEX) | In this method, a cell is engineered to express a recombinant protein which will be used as target protein for aptamer development |
Ohuchi et al., 2006 |
14. | Nanoselection based SELEX | One step method to isolate aptamers using fluorescence and atomic force microscopy |
Peng et al., 2007 |
15. | MonoLEX | Column chromatography and pyrosequencing is used to select specific aptamer sequences |
Nitsche et al., 2007 |
16. | Microfluidic SELEX | Selection of aptamers are performed on a microfluidic chip | Cho et al., 2010. |
17. | High- throughput SELEX | In this method, high-throughput DNA sequencing and advanced bioinformatic analysis is coupled for aptamers selection |
Hoon et al., 2011 |
18. | Particle display SELEX | Flow cytometry based method for aptamer selection | Wang et al., 2014 |
19. | Hi-fidelity SELEX | Digital-PCR is used to intensify the SELEX selection and development |
Ouellet et al., 2015 |
20. | Isogenic cell SELEX | Aptamers are first selected against targets overexpressed on isogenic cell line, then counter- selected against microRNA mediated silencing of targets |
Takahashi et al., 2016 |