TABLE 1.

AmpliCoV sequencing of SARS-CoV-2-positive clinical specimens from Germany, direct comparison of rapid library and ligation library.

Sample ID	Ct	Percentage genome coverage and time of sequencing with depth coverage > 10 after generation of 50,000 reads per sample
		Percentage genome coverage (length)	Time of sequencing (hours)	Percentage genome coverage (length)	Time of sequencing (hours)
		Rapid library*		Ligation library*
AC_01	18.1	98.4	02:42:41	97.3	00:53:15
AC_02	18.4	97.3	01:45:58	96.4	00:40:15
AC_03	24.7	94.4	02:42:35	91.9	00:31:16
AC_04	23.3	96.0	02:41:20	93.6	00:44:32
AC_05	17.7	96.9	01:44:46	95.9	00:40:09
AC_06	21.9	96.0	01:57:23	94.1	00:42:05
AC_07	23.2	95.0	02:33:40	95.0	00:35:09
AC_08	22.1	92.0	01:39:19	92.6	00:40:29

*Multiplexing of 11 samples on one flow cell.