Table 3.
Overview of databases of LncRNAs.
| Database | Description | References |
|---|---|---|
| NONCODEV5 | Knowledge base for ncRNAs | Fang et al., 2018 |
| LNCipedia | lncRNA with secondary structure prediction, protein coding potential and microRNA binding sites | Volders et al., 2013 |
| lncRNAdb v2.0 | Manually curated lncRNAs from literature | Quek et al., 2015 |
| LncATLAS | lncRNA annotated with subcellular localisatiom | Mas-Ponte et al., 2017 |
| lncRNAdisease 2.0 | Experimentally supported lncRNA disease association and molecular targets | Bao et al., 2019 |
| LncRBase | lncRNA with information about their subtypes and interactions | Chakraborty et al., 2014 |
| lncRNome | lncRNA with interactions with other RNAs | Bhartiya et al., 2013 |
| GreeNC v1.1.2 | Database for plant lncRNAs | Paytuvi Gallart et al., 2016 |
| Lnc2Cancer v2.0 | Manually curated database with experimentally supported lncRNA-cancer associations | Gao et al., 2019b |
| EVLncRNAs | Manually curated database with validated with low-throughput experiments | Zhou et al., 2018 |
| ChIPBase v2.0 | lncRNAs and other ncRNA from ChIP seq data | Zhou et al., 2017 |
| DIANA-LncBase v3 | Database dedicated to cataloging miRNA and lncRNA interactions | Karagkouni et al., 2020 |
| LNCediting | Information of lncRNA editing, its impact and interactions with miRNAs | Gong et al., 2017 |
| TCLA | Cancer LncRNome Atlas: lncRNAs predicted from TCGA datasets | Yan et al., 2015 |
| MNDR v2.0 | Experimental and predicted ncRNA-disease associations | Cui et al., 2018 |
| lncRNASNP2 | lncRNA variants and their disease associations | Miao et al., 2018 |
| Lnc2Meth | Manually curated database of regulatory relationships between long non-coding RNAs and DNA methylation associated with human disease | Zhi et al., 2018 |
| DES-ncRNA | Database of human miRNA and lncRNA from literature | Salhi et al., 2017 |
| LincSNP2.0 | disease associated SNPs with lncRNAs | Ning et al., 2017 |
| LncVar | lncRNAs with associated genetic variations | Chen et al., 2017 |
| deepBase v2.0 | ncRNA database from deep sequencing data | Zheng et al., 2016 |
| C-It-loci | Tissue specific transcriptome data (protein coding genes and ncRNA) | Weirick et al., 2015 |
| LncRNA2Target v2.0 | lncRNA and lncRNA-to-target genes after lncRNA knockdown and over expression | Cheng et al., 2019 |
| LncTarD | Manually curated database of lncRNAs and target regulations | Zhao et al., 2020 |
| CRlncRNA | Cancer related lncRNAs along with associations and interactions | Wang et al., 2018 |
| lncRNAKB | Cancer related lncRNAs along with associations and interactions | Seifuddin et al., 2020 |
| Cancer LncRNA Census (CLC) | lncRNAs from GENCODE involved in cancer | Carlevaro-Fita et al., 2020 |