TABLE 1.
Patient ID | Variant (paternal) | Variant (maternal) | Evidence of pathogenicity | ACMG classification |
#1 | c.413C > T, chr19: 17449372, (p. A138V) | PM2 + PM3 + PP3 + PP4 | Likely pathogenic | |
c.509_510del, chr19: 17449466, (p. E170Gfs*42) | PVS1 + PM2 | Likely pathogenic | ||
#2 | c.544G > T, chr19: 17449503, (p.Gly182*) | PVS1 + PM2 | Likely pathogenic | |
c.785A > C, chr19: 17449956, (p.Q262P) | PM2 + BP4 | Uncertain significance | ||
#3 | c.785A > C, chr19: 17449956, (p.Q262P) | PM2 + BP4 | Uncertain significance | |
c.424G > A, chr19:17449383, (p.E142K) | PM2 + PP3 | Uncertain significance |
Trio whole exome sequencing (WES) successfully defined GTPBP3 gene variations in chromosome 19 (GRCh37/hg19, NM_133644). Evidence of Pathogenicity were according to ACMG standards and guidelines 10.1038/gim.2015.30. And the missense prediction is analyzed on the website http://varcards.biols.ac.cn/.