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. 2021 Jul 15;89(8):e00115-21. doi: 10.1128/IAI.00115-21

TABLE 2.

Strains, accession numbers, phylogroups, STs, antigens, and references

Pathotype Strain Accession no. Isolation source Phylogroup ST O antigen H antigen K antigena FimH typeb Reference(s)
Nonpathogenic HS CP000802 Feces, healthy subject A ST46 O9 35 9
MG1655 CP014225 Feces, healthy subject A ST10 O16 H48 27 227
REL606 CP000819 Lab strain A ST93 O7 427/608 228
BG1 MOAH00000000 Bovine intestines B1 ST58 O159 H21 53 229
SE11 AP009240 Feces, healthy subject B1 ST156 O152 H28 38 230
IAI1 CU928160 Feces, healthy subject B1 ST1128 O8 H4 32 231
Nissle 1917 CP007799 Feces, healthy subject B2 ST73 O6 H1 K5 30 232
SE15 AP009378 Feces, health subject B2 ST131 O150 H5 K+ 41 233
ED1a CU928162 Feces, healthy subject B2 ST452 O81 H27 K+ 225/580 233, 234
ExPEC SF-088 CP012635 Bloodstream infection B2 ST95 O1 H7 K1 30 235
SF-166 CP012633 Bloodstream infection B2 ST95 O1 H7 K1 41 235
SF-173 CP012631 Bloodstream infection B2 ST95 O18 H7 K1 18 235
SF-468 CP012625 Bloodstream infection B2 ST95 O25 H4 K1 27 235
CD306 CP013831 Feces, cat B2 ST131 O25 H4 K5 30 236
Ecol_448 CP015076 Infected urine B2 ST131 O16 H5 K100? 41 237, 238
Ecol_743 CP015069 Infected urine B2 ST131 O16 H5 K+ 1426 237, 238
Ecol_745 CP015074 Infected urine B2 ST131 OR H5 K100? 41 237, 238
G749 CP014488 B2 ST131 O25 H4 K1 22 236
JJ1887 CP014316 Recurrent cystitis B2 ST131 O25 H4 K14 30 239
JJ2434 CP013835 B2 ST131 O25 H4 K5 30 236
MNCRE44 CP010876 Sputum B2 ST131 O25 H4 K+ 30 240
MVAST0167 CP014492 B2 ST131 O16 H5 K100? 41 236
SaT040 CP014495 B2 ST131 O25 H4 K5 22 236
ZH063 CP014522 B2 ST131 O25 H4 K5 22 236
ZH193 CP014497 B2 ST131 O25 H4 K5 30 236
UMN026 CU928163 Urine, acute cystitis D ST597 O17 H18 K52 27 241
IAI39 CU928164 Infected urine F ST62 O7 H45 K1 44 233
UPEC VR50 CP011134 Urine, ABU A ST10 OR H- K1 27 93, 242
CI5 CP011018 Pyelonephritis B1 ST5082 O- H14 1155 243
ABU 83972 CP001671 Urine, ABU B2 ST73 O25 H1 K5 12 244
CFT073 AE014075 Blood, Pyelonephritis B2 ST73 O6 H1 K2 10 245, 246
UTI89 CP000243 Urine, cystitis B2 ST95 O18 H7 K1 18 247, 248
536 CP000247 Pyelonephritis B2 ST127 O6 H31 K15 1467 249
K-15KW01 CP016358 Fecal, ABU B2 ST127 O6 H100 K+ 310 250
EC958 HG941718 Infected urine B2 ST131 O25b H4 K100 30 212
NA114 CP002797 urine, UTI B2 ST131 O25 H4 K+ 30 213
MS6198 CP015834 Urine F ST648 O1 H6 K+ 27 251
ST648 CP008697 Pleural effusion F ST648 O51 H4 K+ 18
NMEC IHE3034 CP001969 B2 ST95 O18 H7 K1 18 186, 252
RS218 CP007149 Cerebrospinal fluid B2 ST95 O17 H7 K1 18 253–255
S88 CU928161 Cerebrospinal fluid B2 ST95 O45 H7 K1 54 127
NMEC O18 CP007275 Cerebrospinal fluid B2 ST416 O18 H7 K1 244 194, 256, 257
MCJCHV-1 CP030111 Cerebrospinal fluid B2 ST1193 O75 H5 K1 64 258, 259
CE10 CP003034 Cerebrospinal fluid F ST62 O7 K1 44 260
APEC ACN001 CP007442 Liver, chicken C ST23 O78 H9 35 261
ACN002 CP007491 C ST23 O79 H9 35
APEC O78 CP004009 Lung, turkey C ST23 O79 35 262
789 CP010315 Avian colisepticemia C ST88 O78 H19 27 263
APEC O1 CP000468 Colibacillosis, turkey B2 ST95 O1 H7 K1 15 264
O18 CP006830 Pericardium/lung, chicken B2 ST95 O18 H7 K1 15 265
O2-211 CP006834 Air sack, chicken G ST117 O2 H4 97 266
IMT5155 CP005930 Colisepticemia, chicken B2 ST140 O2 H5 K1 15 267, 268
AIEC LF82 CU651637 Ileum, Crohn’s disease B2 ST135 O83 H1 K+ 436 269
NRG 857C CP001855 Ileum, Crohn’s disease B2 ST135 O83 H1 K+ 2 270
UM146 CP002167 Ileum, Crohn’s disease B2 ST643 O18 H7 K1 18 271
NC101 AEFA01000000 Feces, mouse B2 ST998 O2 H6 K1 1477 272, 273
EHEC/STEC 11128 AP010960 Bloody diarrhea B1 ST16 O111 H- 86 274
12009 AP010958 Bloody diarrhea B1 ST17 O103 H2 25 274
11368 AP010953 Bloody diarrhea B1 ST21 O26 H11 440 274
CFSAN027343 CP037943 Stool B1 ST21 O26 H11 440 275
E2865 AP018808 Cattle B1 ST21 O26 H11 440
FORC_028 CP012693 Stool B1 ST21 O26 H11 440
RM8426 CP028116 Creek B1 ST21 O26 H11 440
2011C-3911 CP015240 Stool B1 ST1727 O79 H7 31 276
RM9387 CP009104 Feces, cattle B1 ST2773 O104 H7 32 277
150 CP028592 Cattle E ST11 O157 H7 82
180-PT54 CP015832 Outbreak isolate E ST11 O157 H7 82 278
1130 CP017434 Cattle hide E ST11 O157 82
28RC1 CP015020 Bovine carcass E ST11 O157 H7 82 279, 280
ATCC 43889 CP015854 Feces, HUS E ST11 O157 H7 82 281, 282
EC4115 CP001164 Spinach outbreak E ST11 O157 H7 82 283
EDL933 CP008957 Ground beef E ST11 O157 H7 36 284
FRIK944 CP016625 Calf feces E ST11 O157 H7 82
FRIK2069 CP015846 Feces E ST11 O157 H7 82
FRIK2455 CP015844 Feces, steer E ST11 O157 H7 82 285, 286
JEONG-1266 CP014314 Feces, steer E ST11 O157 H7 82 287
Sakai BA000007 Stool E ST11 O157 H7 36 288, 289
SRCC 1675 CP015023 Apple cider E ST11 O157 H7 36 279, 280
SS52 CP010304 Feces, cattle E ST11 O157 H7 82 290
TW14359 CP001368 Spinach outbreak E ST11 O157 H7 82 291
Xuzhou21 CP001925 Feces E ST11 O157 H7 36 292
RM13514 CP006027 Lettuce outbreak E ST32 O145 H28 331 293
2013C-4465 CP015241 Stool E ST335 O55 H7 82
RM13516 CP006262 Ice cream outbreak E ST6130 O145 H28 54 293
EAHEC 2009EL-2050 CP003297 Bloody diarrhea B1 ST678 O104 H4 294
2009EL-2071 CP003301 Bloody diarrhea B1 ST678 O104 H4 294
2011C-3493 CP003289 Stool, HUS B1 ST678 O104 H4 295
CC227-11 CP011331 Bloody diarrhea B1 ST678 O104 H4 296
HUSEC2011 HF572917 Stool, HUS B1 ST678 O104 H4
EAEC 55989 CU928145 Watery diarrhea B1 ST678 O104 H4 233
042 FN554766 Diarrhea D ST414 O44 H18 K+ 91
ETEC 90-9272 CP024239 Diarrhea A ST48 O15 H11 41 297
H10407 FN649414 Diarrhea A ST48 O78 H11 K80? 41 120, 298
UMNK88 CP002729 Porcine neonatal diarrhea A ST100 O149 H10 299
214-4 CP025840 Stool A ST398 Nontypable 25 300
90-9269 CP024661 Diarrhea B1 ST761* OUND H4 297
ATCC 43886 CP024256 Feces B1 ST1312 O25 H16 198 301
90-9281 CP024243 Diarrhea B1 ST58 O128 H27 297
103605 CP025920 Stool B1 ST443 O115 H5 24
E24377A CP000800 Diarrhea B1 ST1132 O139 H28 54 9, 302, 303
90-9276 CP024299 Diarrhea B1 ST5305 O114 H49 32 297
90-9280 CP024240 Diarrhea B1 ST5305 O114 H49 32 297
D181 CP024252 Diarrhea B1 ST4493 O182 H21 24 304
2014EL-1345-2 CP024223 E ST182 O169 H41 30 305
EPEC E2348/69 FM180568 Diarrhea B2 ST15 O127 H6 57 306
CB9615 CP001846 Diarrhea, infant E ST335 O55 H7 82 307
RM12579 CP003109 Urine E ST335 O55 H7 82 308
a

K+ indicates a strain that contained kps genes without additional information. If the kps genes were identical to those for strains that had experimentally determined K-types or if the K-type was described with some uncertainty, the K-type is followed by a “?” (for example “K100?”).

b

FimH types were determined using CGE’s FimTyper (226).