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. Author manuscript; available in PMC: 2021 Jul 15.
Published in final edited form as: Comput Math Biophys. 2020 Feb 17;8(1):1–35. doi: 10.1515/cmb-2020-0001

Table 4:

Parameters used for topological feature generation. All features used a cutoff of 11Å. Both lorentz (Lor) and exponential (exp) kernels and Bottleneck (B) and Wasserstein (W) distance metrics were used.

No. features Kernel Kernel parameter Diagram Distance metric Element-specific pair
12 Lor η = 21, ν = 5 Unchanged B, W CC, CN, CO
12 Exp η = 10, κ = 1 Unchanged B, W CC, CN, CO
12 Exp η = 2, κ = 1 Diagonal reflection B, W CC, CN, CO
12 Exp η = 2, κ = 1 Rotated 30° B, W CC, CN, CO
12 Exp η = 2, κ = 1 Rotated 60° B, W CC, CN, CO