Table 6:
Average Pearson correlation coefficients of least squares fitting Cα B-factor prediction of small, medium, large, and superset using 11Å cutoff. Two Bottleneck (B) and Wasserstein (W) metrics using various kernel choices are included. Results for pFRI are taken from Opron et al[32]. GNM and NMA value are taken from the course grained Cα results reported in Park et al [39].
H | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
B & W | B | W | pFRI | GNM | NMA | |||||||
Exp | Lor | Both | Exp | Lor | Both | Exp | Lor | Both | ||||
Small | 0.87 | 0.84 | 0.94 | 0.74 | 0.72 | 0.85 | 0.74 | 0.73 | 0.86 | 0.59 | 0.54 | 0.48 |
Medium | 0.68 | 0.68 | 0.78 | 0.62 | 0.61 | 0.69 | 0.60 | 0.63 | 0.69 | 0.61 | 0.55 | 0.48 |
Large | 0.61 | 0.60 | 0.70 | 0.54 | 0.54 | 0.61 | 0.51 | 0.55 | 0.62 | 0.59 | 0.53 | 0.49 |
Superset | 0.65 | 0.64 | 0.73 | 0.58 | 0.58 | 0.65 | 0.55 | 0.59 | 0.66 | 0.63 | 0.57 | NA |