Table 1. Single-omics analysis results for wildtype comparing 2% (H) and 0.05% (L) glucose.
First block shows GSEA for transcriptomics with adjusted p-value <0.05, arranged in ascending order; second block shows MetaboAnalystR pathway enrichment analysis for metabolomics with combined p-value <0.05 arranged in ascending order, as detailed in Methods. Enriched pathways refer to classifications provided in KEGG.
Transcriptomics | Metabolomics | ||||
---|---|---|---|---|---|
enriched pathways | adjusted p-value | enriched pathways | adjusted p-value | enriched pathways | combined p-value |
Ribosome | 0.0023 | Lysine biosynthesis | 0.0051 | Starch and sucrose metabolism | 0.0010 |
Cell cycle—yeast | 0.0023 | Fructose and mannose metabolism | 0.0075 | Tyrosine metabolism | 0.0065 |
Biosynthesis of amino acids | 0.0023 | Aminoacyl-tRNA biosynthesis | 0.0080 | Galactose metabolism | 0.0073 |
RNA transport | 0.0023 | Sulfur metabolism | 0.0094 | Cysteine and methionine metabolism | 0.0184 |
Ribosome biogenesis in eukaryotes | 0.0023 | One carbon pool by folate | 0.0098 | Glycolysis / Gluconeogenesis | 0.0198 |
Cysteine and methionine metabolism | 0.0023 | Valine, leucine and isoleucine biosynthesis | 0.0101 | Inositol phosphate metabolism | 0.0207 |
RNA polymerase | 0.0023 | Proteasome | 0.0101 | Amino sugar and nucleotide sugar metabolism | 0.0233 |
Purine metabolism | 0.0028 | Autophagy—yeast | 0.0184 | Purine metabolism | 0.0343 |
DNA replication | 0.0028 | Pyrimidine metabolism | 0.0184 | N-Glycan biosynthesis | 0.0361 |
Galactose metabolism | 0.0028 | Amino sugar and nucleotide sugar metabolism | 0.0188 | Pentose phosphate pathway | 0.0364 |
Glyoxylate and dicarboxylate metabolism | 0.0028 | Selenocompound metabolism | 0.0226 | Butanoate metabolism | 0.0443 |
Citrate cycle (TCA cycle) | 0.0028 | Mismatch repair | 0.0231 | ||
Peroxisome | 0.0028 | Glycine, serine and threonine metabolism | 0.0322 | ||
Starch and sucrose metabolism | 0.0028 | Glycolysis / Gluconeogenesis | 0.0387 | ||
Oxidative phosphorylation | 0.0033 | Autophagy—other | 0.0416 | ||
Carbon metabolism | 0.0041 | Meiosis—yeast | 0.0474 |