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. 2021 Jul 2;17(7):e1009640. doi: 10.1371/journal.pgen.1009640

Table 1. Single-omics analysis results for wildtype comparing 2% (H) and 0.05% (L) glucose.

First block shows GSEA for transcriptomics with adjusted p-value <0.05, arranged in ascending order; second block shows MetaboAnalystR pathway enrichment analysis for metabolomics with combined p-value <0.05 arranged in ascending order, as detailed in Methods. Enriched pathways refer to classifications provided in KEGG.

Transcriptomics Metabolomics
enriched pathways adjusted p-value enriched pathways adjusted p-value enriched pathways combined p-value
Ribosome 0.0023 Lysine biosynthesis 0.0051 Starch and sucrose metabolism 0.0010
Cell cycle—yeast 0.0023 Fructose and mannose metabolism 0.0075 Tyrosine metabolism 0.0065
Biosynthesis of amino acids 0.0023 Aminoacyl-tRNA biosynthesis 0.0080 Galactose metabolism 0.0073
RNA transport 0.0023 Sulfur metabolism 0.0094 Cysteine and methionine metabolism 0.0184
Ribosome biogenesis in eukaryotes 0.0023 One carbon pool by folate 0.0098 Glycolysis / Gluconeogenesis 0.0198
Cysteine and methionine metabolism 0.0023 Valine, leucine and isoleucine biosynthesis 0.0101 Inositol phosphate metabolism 0.0207
RNA polymerase 0.0023 Proteasome 0.0101 Amino sugar and nucleotide sugar metabolism 0.0233
Purine metabolism 0.0028 Autophagy—yeast 0.0184 Purine metabolism 0.0343
DNA replication 0.0028 Pyrimidine metabolism 0.0184 N-Glycan biosynthesis 0.0361
Galactose metabolism 0.0028 Amino sugar and nucleotide sugar metabolism 0.0188 Pentose phosphate pathway 0.0364
Glyoxylate and dicarboxylate metabolism 0.0028 Selenocompound metabolism 0.0226 Butanoate metabolism 0.0443
Citrate cycle (TCA cycle) 0.0028 Mismatch repair 0.0231
Peroxisome 0.0028 Glycine, serine and threonine metabolism 0.0322
Starch and sucrose metabolism 0.0028 Glycolysis / Gluconeogenesis 0.0387
Oxidative phosphorylation 0.0033 Autophagy—other 0.0416
Carbon metabolism 0.0041 Meiosis—yeast 0.0474