TABLE 4.

List of common alleles showing polymorphisms in specific varieties.

Locus ID	Chr	BP	Col	Var	P Nuc	Q Nuc	N	P	Obs Het	Obs Hom	Exp Het	Exp Hom	π	FIS
46	1	10900290	111	Allahverdi	–	T	2	0	0	1	0	1	0	0
			111	Sarıfındık	A	T	5	0.6	0	1	0.48	0.52	0.5333	1
			111	All others	A	–	25	1	0	1	0	1	0	0
4404	2	42326313	131	Allahverdi	–	T	2	0	0	1	0	1	0	0
			131	Mincane	C	T	2	0.5	0	1	0.5	0.5	0.6667	1
			131	Tombul_2	C	T	4	0.75	0	1	0.375	0.625	0.4286	1
			131	All others	C	–	24	1	0	1	0	1	0	0
6415	3	30379868	126	Allahverdi	C	T	2	0.5	1	0	0.5	0.5	0.6667	−0.5
			126	Karafındık	C	T	2	0.5	0	1	0.5	0.5	0.6667	1
			126	All others	C	–	28	1	0	1	0	1	0	0
8388	4	29260698	47	Karafındık	G	A	2	0.5	0	1	0.5	0.5	0.6667	1
			47	Tombul_1	G	A	4	0.75	0	1	0.375	0.625	0.4286	1
			47	All others	G	–	26	1	0	1	0	1	0	0
14093	7	7220272	30	Sarıfındık	T	C	5	0.8	0	1	0.32	0.68	0.3556	1
			30	Yomra	T	C	2	0.5	0	1	0.5	0.5	0.6667	1
			30	All others	T	–	25	1	0	1	0	1	0	0
15955	9	16105828	118	Karafındık	T	A	2	0.5	0	1	0.5	0.5	0.6667	1
			118	Tombul_1	T	A	4	0.75	0	1	0.375	0.625	0.4286	1
			118	All others	T	–	26	1	0	1	0	1	0	0

Position mapped in genome is given by chromosome (Chr), start position of locus (BP), position of the SNP within locus (Col), variety name (Var), reference nucleotide (P Nuc), alternative nucleotide (Q Nuc), number of individuals that contain the locus, proportion of the reference nucleotide in these individuals (P), observed (Obs) and expected (Exp) heterozygosity (Het) and homozygosity (Hom), nucleotide diversity (π), and inbreeding coefficient (F_IS).