TABLE 6.
List of private alleles that were specifically polymorphic in either Resistant or Susceptible group.
| Locus ID | Chr | BP | Col | Group | P Nuc | Q Nuc | N | P | Obs Het | Obs Hom | Exp Het | Exp Hom | π | FIS |
| 781 | 1 | 22594282 | 18 | Resistant | C | T | 4 | 0.125 | 0.250 | 0.750 | 0.219 | 0.781 | 0.250 | 0.000 |
| 22018 | 3 | 3188310 | 139 | Resistant | T | A | 5 | 0.400 | 0.000 | 1.000 | 0.480 | 0.520 | 0.533 | 1.000 |
| 9218 | 5 | 10896200 | 127 | Resistant | C | T | 7 | 0.357 | 0.143 | 0.857 | 0.459 | 0.541 | 0.495 | 0.711 |
| 18249 | 11 | 17261698 | 72 | Resistant | T | C | 4 | 0.250 | 0.500 | 0.500 | 0.375 | 0.625 | 0.429 | −0.167 |
| 21961 | 3 | 30158075 | 40 | Susceptible | C | T | 9 | 0.333 | 0.000 | 1.000 | 0.444 | 0.556 | 0.471 | 1.000 |
Position mapped in genome is given by chromosome (Chr), start position of locus (BP), position of the SNP within locus (Col), group, reference nucleotide (P Nuc), alternative nucleotide (Q Nuc), number of individuals that contain the locus, proportion of the reference nucleotide in these individuals (P), observed (Obs) and expected (Exp) heterozygosity (Het) and homozygosity (Hom), nucleotide diversity (π), and inbreeding coefficient (FIS).