Table 3a.
Docking analysis of native and destabilizing nonsynonymous mutants of S-protein with ACE2 receptor using HADDOCK.
| Protein Type | Domain | Haddock Score | Van der waal energy (Kcal mol−1) | Electrostatic energy (Kcal mol−1) | Desolvation energy (Kcal mol−1) | Restraints violation energy (Kcal mol−1) | Buried surface area (A °2) |
|---|---|---|---|---|---|---|---|
| Native-ACE2 | – | −123.5 ± 13.2 | −51.8 ± 3.3 | −374.5 ± 80.4 | −10.3 ± 3.7 | 134.0 ± 27.6 | 2099.9 ± 186.4 |
| L8V-ACE2 | SP | −118.8 ± 6.1 | −44.1 ± 4.6 | −345.6 ± 18.0 | −12.8 ± 5.0 | 73.0 ± 3.6 | 2012.7 ± 146.2 |
| L8W-ACE2 | −120.8 ± 16.0 | −56.9 ± 8.9 | −320.2 ± 29.3 | −10.5 ± 2.8 | 106.3 ± 36.1 | 2082.0 ± 84.8 | |
| L18F-ACE2 | NTD | −116.0 ± 3.2 | −54.4 ± 11.4 | −319.1 ± 51.9 | −8.6 ± 3.3 | 108.3 ± 57.1 | 2004.5 ± 81.5 |
| Y145H-ACE2 | −119.0 ± 9.9 | −57.7 ± 4.0 | −294.7 ± 21.8 | −13.3 ± 2.8 | 108.7 ± 28.4 | 1986.3 ± 52.0 | |
| M153T-ACE2 | −115.5 ± 1.2 | −47.7 ± 9.6 | −343.4 ± 77.9 | −7.1 ± 6.1 | 80.0 ± 29.1 | 1946.9 ± 59.7 | |
| F157S-ACE2 | −118.4 ± 2.8 | −56.9 ± 1.5 | −282.9 ± 27.0 | −13.4 ± 4.6 | 85.0 ± 36.9 | 1954.0 ± 25.2 | |
| G476S-ACE2 | CTD/RBD | −119.2 ± 6.5 | −50.7 ± 4.5 | −375.0 ± 33.8 | −4.9 ± 0.9 | 113.9 ± 60.6 | 1910.9 ± 123.7 |
| L611F-ACE2 | Linker | −117.0 ± 14.4 | −66.2 ± 6.1 | −242.3 ± 39.5 | −7.9 ± 2.6 | 55.4 ± 16.2 | 2019.9 ± 243.6 |
| A879S-ACE2 | S2 | −116.8 ± 12.7 | −48.8 ± 12.0 | −339.1 ± 44.8 | −6.9 ± 5.7 | 66.8 ± 22.6 | 2001.8 ± 193.5 |
| C1247F-ACE2 | TM | −117.1 ± 4.0 | −51.5 ± 6.4 | −315.3 ± 19.5 | −13.3 ± 3.3 | 108.1 ± 28.7 | 1977.5 ± 72.2 |
| C1254F-ACE2 | −113.4 ± 8.0 | −65.8 ± 9.7 | −216.8 ± 48.0 | −11.6 ± 5.3 | 73.5 ± 35.5 | 2098.8 ± 135.2 |