Table 3b.
Docking analysis of native and nonsynonymous stabilizing mutants of S-protein with ACE2 receptor using HADDOCK.
| Protein Type | Domain | Haddock Score | Van der waal energy (Kcal mol−1) | Electrostatic energy (Kcal mol−1) | Desolvation energy (Kcal mol−1) | Restraints violation energy (Kcal mol−1) | Buried surface area (A °2) |
|---|---|---|---|---|---|---|---|
| Native-ACE2 | – | −123.5 ± 13.2 | −51.8 ± 3.3 | −374.5 ± 80.4 | −10.3 ± 3.7 | 134.0 ± 27.6 | 2099.9 ± 186.4 |
| H49Y-ACE2 | NTD | −136.5 ± 6.7 | −50.8 ± 5.5 | −450.8 ± 19.9 | −6.4 ± 4.2 | 108.8 ± 37.7 | 2278.1 ± 100.4 |
| S50L-ACE2 | −131.3 ± 10.3 | −55.0 ± 2.2 | −381.8 ± 44.3 | −10.8 ± 2.7 | 108.0 ± 22.7 | 2232.6 ± 166.2 | |
| N501Y-ACE2 | RBD | −136.3 ± 6.3 | −61.5 ± 4.9 | −406.1 ± 23.8 | −2.6 ± 2.4 | 90.8 ± 30.6 | 2128.1 ± 109.5 |
| D614G-ACE2 | Linker | −128.2 ± 12.0 | −45.8 ± 7.5 | −427.7 ± 26.5 | −6.9 ± 4.1 | 99.4 ± 43.2 | 2135.1 ± 87.8 |
| A845V-ACE2 | S2 | −127.7 ± 4.7 | −43.9 ± 6.4 | −434.2 ± 47.7 | −9.0 ± 5.2 | 120.7 ± 19.4 | 2213.1 ± 90.2 |
| P1143L-ACE2 | −125.9 ± 17.1 | −47.2 ± 7.5 | −398.4 ± 82.8 | −9.5 ± 3.2 | 105.2 ± 47.0 | 2119.3 ± 118.2 |