Figure 3.

-log(p-values) of t-tests for comparing the variance explained by the equal number of randomly selected SNPs (1,000 permutations) of two gene sets

The upper triangle indicates the results in the MGS sample, and the lower triangle indicates the results in the Han Chinese sample, both with SNPs within 20-kb flanking regions of a gene. The number of genes of each gene set is shown in the diagonal grid. The cells with ∗ indicate non-significant p-value > 0.0009 (from two-sample Student's t-test; Bonferroni corrected).