Deposited data |
|
PGC3 SZ GWAS summary statistics |
The Schizophrenia Working Group of the Psychiatric Genomics Consortium et al., 2020 |
www.med.unc.edu/pgc/pgc-workgroups/schizophrenia |
Chinese Han SZ GWAS summary statistics |
Li et al., 2017; Yu et al., 2017
|
Accession number 10638https://doi.org/10.18170/DVN/IHROUE
|
RNA-seq data from cell lines of 8 donors per cell type (iPSC, NPC, DA, and GABA) |
Zhang et al., 2020; Forrest et al., 2017; Zhang et al., 2018
|
GSE129017 and GSE132757
|
|
Software and algorithms |
|
IMPUTE2 software program (version 2.1.2) |
Howie et al., 2011; Howie et al., 2009
|
http://mathgen.stats.ox.ac.uk/impute/impute_v2.html |
SHAPEIT2 (version v2.r644) |
Delaneau et al., 2011 |
https://mathgen.stats.ox.ac.uk/genetics_software/shapeit/shapeit.html |
LDSC |
Bulik-Sullivan et al., 2015; Finucane et al., 2015
|
https://github.com/bulik/ldsc |
H-MAGMA |
Sey et al., 2020 |
https://github.com/thewonlab/H-MAGMA |
|
Other |
|
1,000 Genomes Phase 3 panel (October 2014 Data Release) |
Auton et al., 2015 |
https://www.internationalgenome.org/category/phase-3/ |
1000G_EUR_Phase3_baseline v2.2 |
Bulik-Sullivan et al., 2015; Finucane et al., 2015
|
https://github.com/bulik/ldsc/issues/96 |