Antibodies |
|
Ankyrin-G (staining) scaffold protein monoclonal mouse |
UC Davis/NIH NeuroMab Facility |
Cat# 73-146; RRID:AB_10697718 |
Anti-GABAAR β3 mouse monoclonal |
UC Davis/NIH NeuroMab Facility |
Cat# 75-149; RRID: AB_2109585 |
Anti-Cadherin, pan Rabbit polyclonal |
Cell Signaling |
Cat# 4068; RRID:AB_2158565 |
Anti-Collybistin rabbit polyclonal |
Synaptic Systems |
Cat# 261 003; RRID:AB_2619977 |
GABAAR α1 N-terminal rabbit polyclonal |
Abcam |
Cat# ab33299; RRID:AB_732498 |
Anti-GABAAR α2 N-terminal rabbit polyclonal |
Synaptic Systems |
Cat# 224 103; RRID:AB_2108839 |
GABAAR α2 C-terminal rabbit polyclonal |
Phosphosolutions |
No longer available |
Anti-GABAAR γ2L mouse monoclonal |
UC Davis/NIH NeuroMab Facility |
Cat #75-442; RRID: AB_2617122 |
GAPDH rabbit polyclonal |
Santa Cruz |
No longer available |
Anti-Gephyrin 3B11 mouse monoclonal |
Synaptic Systems |
Cat# 147 111; RRID:AB_887719 |
Anti-Gephyrin mAb7a mouse monoclonal |
Synaptic Systems |
Cat# 147 011; RRID:AB_887717 |
Anti-Gephyrin RbmAb7a rabbit monoclonal |
Synaptic Systems |
Cat# 147 008; RRID:AB_2619834 |
Anti-GFP Antibody, Unconjugated chicken polyclonal |
Cell Signaling |
Cat# 2555; RRID:AB_10692764 |
Anti-Sodium Channel, Pan antibody mouse monoclonal |
Sigma Aldrich |
Cat# S8809; RRID:AB_477552 |
Anti-Synapsin 1 antibody mouse monoclonal |
Synaptic Systems |
Cat# 106 011; RRID:AB_2619772 |
Anti-VGAT antibody guinea pig polyclonal |
Synaptic Systems |
131 004; RRID:AB_887873 |
Donkey anti-mouse peroxidase conjugated |
Jackson ImmunoResearch |
Cat# 715-036-151; RRID:AB_2340774 |
Donkey anti-rabbit peroxidase conjugated |
Jackson ImmunoResearch |
Cat# 711-036-152; RRID:AB_2340590 |
Goat anti-guinea pig Alexa Fluor 647 |
ThermoFisher Scientific |
Cat# A-21450; RRID:AB_2735091 |
Goat anti-mouse Alexa Fluor 488 |
ThermoFisher Scientific |
Cat# A28175; RRID:AB_2536161 |
Goat anti-rabbit Alexa Fluor 568 |
ThermoFisher Scientific |
Cat# A-11011; RRID:AB_143157 |
|
Chemicals, Peptides, and Recombinant Proteins |
|
1 M CaCl2
|
Sigma Aldrich |
Cat#: 21114 |
1 M KCl |
Sigma Aldrich |
Cat#: 60121 |
1 M MgCl2
|
Sigma Aldrich |
Cat#: 63020 |
10x Phosphate Buffered Saline (PBS) |
ThermoFisher Scientific |
Cat#: BP399-4 |
32% PFA stock solution |
Electron Miscroscopy Sciences |
Cat#: 15714S |
Acetic acid, glacial |
ThermoFisher Scientific |
Cat#: A38-212 |
Bovine Serum Albumin (BSA) |
Sigma Aldrich |
Cat#: A7906 |
Cresyl violet acetate |
Sigma Aldrich |
Cat#: C-5042 |
CsCl |
Sigma Aldrich |
Cat#: C4036 |
CsOH |
Sigma Aldrich |
Cat#: C8518 |
D-Glucose |
Sigma Aldrich |
Cat#: G8270 |
Dehydrated milk |
Amazon |
https://amazon.com/Emergency-Essentials-Instant-Nonfat-Milk/dp/B003SQ98EC |
Ethanol, 200 proof |
VWR |
Cat#: 89125-172 |
Ethylene glycol-bis(2-aminoethylether)- N,N,N′,N′-tetraacetic acid (EGTA) |
Sigma Aldrich |
Cat#: E3889 |
Ethylenediaminetetraacetic acid (EDTA) |
Sigma Aldrich |
Cat#: E9884 |
EZ-Link Sulfo-NHS-SS-Biotin |
ThermoFisher Scientific |
Cat#: 21328T |
Fisher Healthcare Tissue-Plus O.C.T. Compound |
ThermoFisher Scientific |
Cat#: 23-730-571 |
GABA |
Sigma Aldrich |
Cat#: A2129 |
GIBCO B27 (50x) |
ThermoFisher Scientific |
Cat#: 17504044 |
GIBCO GlutaMAX Supplement |
ThermoFisher Scientific |
Cat#: 35050061 |
GIBCO Penicillin/streptomycin (10,000 U/mL) |
ThermoFisher Scientific |
Cat#: 15140122 |
GIBCO Trypsin (2.5%), no phenol red |
ThermoFisher Scientific |
Cat#: 15090046 |
Glycine |
VWR |
Cat#: 0167 |
Invitrogen 1 M HEPES buffer solution |
ThermoFisher Scientific |
Cat#: 15630080 |
Invitrogen HBSS, 10X, no phenol red, no calcium, no magnesium |
ThermoFisher Scientific |
Cat#: 14185-052 |
Invitrogen MES SDS Running Buffer 20x |
Thermofisher Scientific |
Cat#: NP0002 |
Invitrogen NuPAGE LDS Sample Buffer 4x |
ThermoFisher Scientific |
Cat#: NP0007 |
Invitrogen ProLong Gold Antifade Mounting Reagent |
Thermo Fisher Scientific |
Cat#: P36930
|
Invitrogen Protein A Dynabeads |
ThermoFisher Scientific |
Cat#: 10001D |
Isofluorane |
Piramal Healthcare |
Cat#: NDC 66794-013-25 |
Kainic Acid (Kainate) |
Sigma Aldrich |
Cat#: K0250 |
Kynurenic Acid |
Sigma Aldrich |
Cat#: K337 |
L-glutamine |
Sigma Aldrich |
Cat#: G8540 |
Laminin |
Sigma Aldrich |
Cat#: L2020 |
Mannitol |
Sigma Aldrich |
Cat#: M4125 |
Meglumine (NMDG) |
Sigma Aldrich |
Cat#: M9179 |
Methanol |
Sigma Aldrich |
Cat#: 179337 |
Mg-ATP |
Sigma Aldrich |
Cat#: A9187 |
MgSO4
|
Sigma Aldrich |
Cat#: M3409 |
Na-ascorbate |
Sigma Aldrich |
Cat#: A7631 |
Na-GTP |
Sigma Aldrich |
Cat#: G8877 |
NaCl |
Sigma Aldrich |
Cat#: S7653 |
NaF |
Sigma Aldrich |
Cat#: S7920 |
NaH2PO4
|
Sigma Aldrich |
Cat#: S9638 |
NaHCO3
|
Sigma Aldrich |
Cat#: S6297 |
Neurobasal-A Medium, serum-free |
ThermoFisher Scientific |
Cat#: 10888022 |
Normal Goat Serum (NGS) |
Abcam |
Cat#: ab7481 |
Pierce Streptavidin Agarose beads |
ThermoFisher Scientific |
Cat#: 20347 |
Pierce BCA Protein Assay Kit |
ThermoFisher Scientific |
Cat#: 23225 |
Pierce ECL Western Blotting Substrate |
ThermoFisher Scientific |
Cat#: 32106 |
Poly-L-Lysine hydrobromide |
Sigma Aldrich |
Cat#: P1274 |
Roche cOmplete, Mini Protease Inhibitor Cocktail |
Sigma Aldrich |
Cat#: 11836153001 |
Roche PhosSTOP |
Sigma Aldrich |
Cat#: 4906845001 |
Sodium orthovanadate |
Sigma Aldrich |
Cat#: 450243 |
Sodium pyruvate |
Sigma Aldrich |
Cat#: P3662 |
Sucrose |
VWR |
Cat#: 0335 |
Tetrodotoxin (TTX) |
Tocris |
Cat#: 1069 |
Thiourea |
Sigma Aldrich |
Cat#: 8658 |
Tris |
VWR |
Cat#: 0497 |
Triton X-100 |
Sigma Aldrich |
Cat#: T8787 |
Tween-20 |
Sigma Aldrich |
Cat#: P2287 |
β-mercaptoethanol |
Sigma Aldrich |
Cat#: 63689 |
|
Experimental Models: Organisms/Strains |
|
Mouse: Gabra1-2(−/−) Mouse: Gabra1-2(+/−) Mouse: Gabra1-2(+/+)
|
This paper |
N/A |
Mouse: pHlourin-α2(+/+) Mouse: pHlourin-α2(+/+)/Gabra1-2(+/+)
|
Nakamura et al., 2016 |
N/A |
Mouse: Gabra2-1(+/−)/Gabra1-2(+/−)
|
Hines et al., 2018; This paper |
N/A |
|
Oligonucleotides |
|
Gabra1-2 Genotyping Forward Primer: 5′-GGGTC GACAACTATTTCACCAAGAGAGG-3′ |
Integrated DNA Technologies |
N/A |
Gabra1-2 Genotyping Reverse Primer: 5′-GGGC GGCCGCTTATCGGTCGATTTTGCTGACGC-3′ |
Integrated DNA Technologies |
N/A |
Gabra1-2 Sequencing Primer 1: 5′-TGCCAGGGA GTCTAACCGT-3′ |
Integrated DNA Technologies |
N/A |
Gabra1-2 Sequencing Primer 2: 5′-CAAATAGCA GCGGAAAGGCT-3′ |
Integrated DNA Technologies |
N/A |
Gabra1-2 Sequencing Primer 3: 5′-CTGCCAGG GAGTCTAACCGT-3′ |
Integrated DNA Technologies |
N/A |
Gabra1-2 Sequencing Primer 4: 5′-GACAGTCG GTCGATTTTGCTG-3′ |
Integrated DNA Technologies |
N/A |
|
Software and Algorithms |
|
GraphPad Prism, v.7.01 |
GraphPad Software |
RRID:SCR_002798 https://www.graphpad.com
|
Image Lab, v.5.0 |
Bio-Rad |
RRID:SCR_014210 http://www.bio-rad.com
|
ImageJ v.2.0.0 |
Fiji |
RRID:SCR_002285 https://imagej.net
|
LabChart v.7.3.8 |
AD Instruments |
RRID:SCR_001620 https://www.adinstruments.com/products/labchart
|
MetaMorph, v.7.8.0.0 |
Molecular Devices |
RRID:SCR_002368 https://www.moleculardevices.com
|
Mini-Analysis Software v.5.6.4 |
Synaptosoft |
http://www.synaptosoft.com/MiniAnalysis/ |
MotorMonitor |
Kinder Scientific |
http://kinderscientific.com/products/open_field |
NIS-Elements, v.4.20 |
Nikon |
RRID:SCR_014329 https://www.microscope.healthcare.nikon.com/products/software
|
pClamp v.10.3 |
Moleclular Devices |
RRID:SCR_011323 https://www.moleculardevices.com
|
Sirenia Acquisition, v.1.7.10 |
Pinnacle Technology |
RRID:SCR_016183 https://www.pinnaclet.com
|
|
Other |
|
Axon Axopatch 200B Microelectrode Amplifier |
Molecular Devices |
Cat#: 200B https://www.moleculardevices.com/sites/default/files/en/assets/data-sheets/dd/cns/axon-axopatch-200b-microelectrode-amplifier.pdf
|
ChemiDoc XRS |
Bio-Rad |
Cat#: 1708265 http://www.bio-rad.com/en-uk/product/chemidoc-xrs-system?ID=NINJHRKG4
|
Crytostat |
ThermoFisher Scientific |
Cat#: HM525 No longer available |
Leica VT1000 S Vibrating blade microtome |
Leica |
Cat#: VT1000 S https://www.leicabiosystems.com/histology-equipment/sliding-and-vibrating-blade-microtomes/vibrating-blade-microtome/products/leica-vt1000-s/
|
Nikon A1 confocal scanning laser microscope |
Nikon |
Cat#: A1HD25 https://www.microscope.healthcare.nikon.com/products/confocal-microscopes/a1hd25-a1rhd25
|
Nikon Eclipse E800 Brightfield Microscope |
Nikon |
No longer available |