TABLE 2.
Class | Order | Species | Accession number | The known repeat length (>250 bp) | Size (bp) | A + T (%) | References |
Coccolithophyceae | Phaeocystales | Phaeocystis globosa CNS00066 | MW435860 | two, 6.7 kb + 14 kb | 43,585 | 70.6 | This study |
Phaeocystis globosa CNS00069 | MW435863 | ∼343 bp | 24,330 (partial) | 66.7 | This study | ||
Phaeocystis globosa CNS00087 | MW435865 | ∼1.4 kb | 25,390 (partial) | 67.2 | This study | ||
Phaeocystis globosa CNS00262 | MW435861 | ∼705 bp | 24,764 (partial) | 66.9 | This study | ||
Phaeocystis globosa CNS00266 | MW435862 | ∼334 bp | 24,328 (partial) | 66.7 | This study | ||
Phaeocystis globosa Pg-G(A) | KC967226 | ∼709 bp | 24,477 (partial) | 69.5 | Smith et al., 2014 | ||
Phaeocystis antarctica CCMP1374 | JN131834 & JN131835 | ∼763 bp | 19,177 + 8,370 (partial) | 70.3 | Smith et al., 2014 | ||
Isochrysidales | Emiliania huxleyi CCMP1516 | JN022704 | ∼1.9 kb | 28660 | 71.5 | Smith and Keeling, 2012 | |
Emiliania huxleyi CCMP 373 | AY342361 | ∼2.2 kb | 29,013 | 71.7 | Puerta et al., 2004 | ||
Prymnesiales | Chrysochromulina tobinii CCMP291 | KJ201908 | ∼9.3 kb | 34,288 | 68.6 | Hovde et al., 2014 | |
Chrysochromulina parva UW 1161 | NC_036938 | none | 24,009 (partial) | 67.5 | Hovde et al., 2019 | ||
Chrysochromulina sp. NIES-1333 | AB930144 | two, ∼1.6 kb + 1.6 kb | 34,291 | 70.0 | Nishimura et al., 2014 | ||
Incertae sedis | Haptophyta sp. isolate H2 | MK188944 | none | 25,180 | 77.9 | Wideman et al., 2020 | |
Pavlovophyceae | Pavlovales | Pavlova lutheri CCMP 1325 | HQ908424 | four, ∼6 kb | 34,086 (partial) | 62.7 | – |
Pavlova sp. NIVA-4/92 | MN564259 | three, ∼7.3 kb | 36,202 | 62.5 | Hulatt et al., 2020 | ||
Diacronema viridis voucher KMMCC 0113 | MW044630 | ∼3.8 kb | 29,282 | 60.8 | – | ||
Diacronema viridis culture CCMP:620 | MW044629 | ∼3.8 kb | 29,282 | 60.8 | – | ||
Rappephyceae | Pavlomulinales | Pavlomulina ranunculiformis NIES-3900 | LC564891 & LC564892 | none | 11,199 + 9,863 (partial) | 54.1 | Kawachi et al., 2021 |
“–” represent no references.