Table 5.
Expression profile of effector candidates.
| Early induced | Late induced | Upregulated in planta | Downregulated in planta | Other DEa | Total in genome | % DEGs of totalb | |
|---|---|---|---|---|---|---|---|
| Total transcripts | 437 | 809 | 2,613 | 5,319 | 1,117 | 29,913 | 34.4 |
| Secreted | 80 | 141 | 442 | 351 | 91 | 1,887 | 58.6 |
| MAMP: elicitin | 4 | 6 | 23 | 13 | 5 | 67 | 76.1 |
| MAMP: transglutaminase | 4 | 0 | 4 | 3 | 1 | 18 | 66.7 |
| Apoplastic: secreted CAZYmes | 19 | 36 | 105 | 40 | 14 | 281 | 76.2 |
| Apoplastic: cutinase | 1 | 0 | 3 | 0 | 0 | 6 | 66.7 |
| Apoplastic: glucanase inhibitor | 1 | 1 | 10 | 4 | 0 | 30 | 53.3 |
| Apoplastic: NLP | 2 | 6 | 10 | 3 | 0 | 35 | 60.0 |
| Apoplastic: phytotoxin | 0 | 0 | 1 | 1 | 0 | 3 | 66.7 |
| Apoplastic: protease inhibitor (cathepsin) | 0 | 0 | 0 | 2 | 1 | 4 | 75.0 |
| Apoplastic: protease inhibitor (cystatin-like) | 0 | 0 | 2 | 0 | 1 | 5 | 60.0 |
| Apoplastic: protease inhibitor (Kazal-type) | 5 | 1 | 6 | 4 | 0 | 23 | 69.6 |
| Cytoplasmic: RxLR | 9 | 6 | 48 | 4 | 1 | 158 | 43.0 |
| Cytoplasmic: CRN | 1 | 1 | 2 | 69 | 2 | 127 | 59.1 |
Numbers of differentially expressed (DE) transcripts, summarised by effector family, showing DE at 24 hpi (early induced) or 48 hpi (late induced) in both Fragaria x ananassa ‘Emily' and ‘Fenella' cultivars, or upregulated at both timepoints or downregulated at both timepoints in planta.
a
DE, Differential expression.
b
DEGs, Differentially expressed genes.