Table 1. Correlation between vtRNA promoters ATAC-seq and DNA methylation values in the Pan-Cancer TCGA samples.
Average ± SD | Spearman
correlation (ATAC-seq vs DNA methylation) |
|||
---|---|---|---|---|
vtRNA | Promoter
ATAC-seq |
Promoter DNA
methylation |
Rs | p-value |
vtRNA1-1 | 4.1 ± 0.6 | 0.09 ± 0.07 | -0.24 | <0.0001 |
vtRNA1-2 | 2.9 ± 1.6 | 0.42 ± 0.20 | -0.74 | <0.0001 |
vtRNA1-3 | 1.7 ± 1.2 | 0.22 ± 0.15 | -0.54 | <0.0001 |
vtRNA2-1 | 2.5 ± 1.4 | 0.47 ± 0.21 | -0.78 | <0.0001 |
The Spearman correlation was calculated for the 329 primary tumors studied by ATAC-seq and DNA methylation.