Table 1.
Comparison of the ZF1 de novo assembly with the published human genome assemblies.
| Assembly | Assembly approach | Sequencing platform | Contig N50 (Mb) | Scaffold N50 (Mb) | Genome size (Gb) | Gaps number | Gap length (Mb) |
|---|---|---|---|---|---|---|---|
| ZF1 | WGS, Hi-C | PacBio, BioNano, 10X Genomics, Hi-C, Illumina-PE | 24.57 | 58.8 | 2.9 | 740 | 7.82 |
| HX1 | WGS | PacBio, BioNano, Illumina-PE | 8.33 | 21.98 | 2.93 | 10 901 | 39.34 |
| AK1 | WGS, BAC | PacBio, BioNano, Illumina-PE | 17.92 | 44.85 | 2.9 | 264 | 37.34 |
| GRCh38 | BAC, Fosmid | Sanger, FISH, OM, fingerprint contigs | 56.41 | 67.79 | 3.2 | 940 | 159.97 |
| NA12878(ASM101398) | WGS | PacBio, BioNano | 1.56 | 26.83 | 3.2 | 2332 | 146.35 |
WGS, whole-genome sequencing; BAC, bacterial artificial chromosome; PE, pair end; FISH, fluorescence in situ hybridization; OM, optical mapping.