Table 1.
Summary statistics for the genome sequences, annotation and population parameters.
| Swamp buffalo | River buffalo | ||
|---|---|---|---|
| Genome | Total genome size (Mb) | 2631 | 2646 |
| Chromosomes number | 24 | 25 | |
| Scaffolds numbera | 24 + 1510 | 25 + 2279 | |
| Scaffolds N50 (Mb) | 117.3 | 116.1 | |
| Scaffolds L50 | 8 | 9 | |
| Total contigs size (Mb) | 2609 | 2626 | |
| Contigs N50 (Mb) | 8.8 | 3.1 | |
| Annotation | Total gene number | 19 279 | 20 202 |
| Average CDS length (bp) | 1764.5 | 1662.2 | |
| BUSCO assessment | 96.80% | 96.00% | |
| Repeat content | 47.26% | 47.31% | |
| Population | Sample number | 132 | 98 |
| SNP numberb | 18 737 564 | 23 722 820 | |
| Genetic diversity θ (4Nμ) | 0.001805 | 0.002743 | |
| Population differentiation (Fst) | 0.27 | ||
aNumber of chromosome-level scaffolds and unplaced scaffolds.
bSNPs called among samples without potential gene flow.