Table 1. Proportion of goats with genotypes associated with prolonged incubation period or resistant genotypes, by codon along with significance test results for overall effect of each breakout variable (gender, region, primary production, and breed).
| Codon | 127 | 142 | 143 | 146 | 154 | 211 | 222 | 240 | 146, 222 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Type of protection | Prolonged Incubation | Prolonged Incubation | Prolonged Incubation | Resistance | Prolonged Incubation | Prolonged Incubation | Resistance | Prolonged Incubation | Resistance | |||||||||
| Allele | S | M | R | S, D | H | Q | K | S | S, D, K | |||||||||
| Overall proportion | 0.3 | 8.1 | 14.8 | 33.3 | 1.1 | 5.4 | 0.6 | 46.0 | 33.8 | |||||||||
| Gender (P value) | 0.013 | 0.081 | 0.708 | 0.028 | 0.600 | 0.398 | 0.442 | 0.392 | 0.033 | |||||||||
| Doe | 0.3 | a | 8.4 | 14.7 | 34.2 | a | 1.0 | 5.6 | 0.6 | 45.7 | 34.7 | a | ||||||
| Buck | 0.1 | ab | 5.1 | 15.8 | 23.6 | ab | 1.3 | 3.6 | 1.0 | 49.9 | 24.4 | ab | ||||||
| Region (P value) | 0.881 | 0.232 | 0.974 | 0.077 | 0.034 | 0.002 | 0.005 | 0.135 | 0.113 | |||||||||
| West | 0.3 | 6.6 | 14.8 | 37.6 | 0.5 | a | 2.2 | a | 0.1 | a | 43.2 | 37.7 | ||||||
| East | 0.3 | 9.3 | 14.8 | 29.7 | 1.5 | ab | 8.1 | ab | 1.0 | ab | 48.3 | 30.7 | ||||||
| Primary production (P value) | 0.015 | <0.001 | <0.001 | <0.001 | 0.415 | 0.401 | 0.133 | 0.240 | <0.001 | |||||||||
| Meat | 0.0 | a | 5.2 | a | 17.9 | a | 41.1 | a | 1.3 | 5.0 | 0.6 | 43.9 | 41.7 | a | ||||
| Dairy | 0.8 | ab | 20.6 | ab | 6.7 | ab | 17.1 | ab | 0.7 | 7.3 | 1.1 | 49.3 | 18.2 | ab | ||||
| Other | 0.4 | ab | 4.8 | ab | 13.9 | ab | 27.5 | a | 0.9 | 4.9 | 0.1 | 48.6 | 27.6 | ab | ||||
| Breed (P value) | 0.187 | 0.003 | <0.001 | <0.001 | 0.207 | <0.001 | 0.805 | <0.001 | <0.001 | |||||||||
| Alpine | 0.0 | 38.2 | abce | 0.1 | a | 3.8 | ab | 0.1 | 11.0 | abc | 0.4 | 51.2 | a | 4.2 | abc | |||
| Angora | 0.0 | 1.2 | abcd | 0.1 | a | 0.9 | a | 0.0 | 0.0 | abcd | 0.0 | 50.7 | a | 0.9 | ab | |||
| Boer | 0.1 | 3.5 | abcd | 26.6 | b | 47.0 | abc | 0.5 | 2.1 | abcdef | 0.1 | 51.4 | a | 47.0 | abcd | |||
| Cashmere | 0.0 | 0.0 | a | 17.1 | abcd | 23.0 | abc | 0.0 | 2.0 | abcdef | 0.0 | 29.7 | a | 23.0 | abcde | |||
| Fainting goats | 0.0 | 7.7 | abcd | 0.0 | a | 3.4 | abcd | 19.7 | 0.4 | abcdefg | 0.0 | 38.8 | a | 3.4 | abcdef | |||
| Kiko | 0.0 | 4.9 | abcd | 18.0 | abcd | 17.2 | abc | 1.3 | 14.6 | abc | 0.0 | 46.3 | a | 17.2 | abcde | |||
| LaMancha | 0.1 | 13.5 | abcd | 0.0 | a | 35.8 | abcde | 0.0 | 9.2 | abcdef | 0.1 | 31.5 | a | 35.9 | abcde | |||
| Nigerian dwarf | 0.0 | 1.3 | ab | 32.9 | ab | 0.7 | a | 0.1 | 0.8 | abcde | 0.0 | 47.0 | a | 0.7 | ab | |||
| Nubian | 0.2 | 10.6 | abcd | 4.7 | abcd | 38.6 | abcde | 0.2 | 0.3 | abcdef | 0.0 | 46.6 | a | 38.6 | abcde | |||
| Oberhasli | 0.0 | 12.8 | abcd | 0.4 | abc | 1.7 | ab | 0.0 | 28.5 | abc | 23.1 | 95.9 | b | 24.8 | abcde | |||
| Pygmy | 0.0 | 0.0 | a | 27.0 | abcde | 0.6 | ab | 0.0 | 0.0 | abcd | 0.0 | 52.8 | abc | 0.6 | abc | |||
| Pygora | 0.0 | 0.0 | a | 0.0 | abcdef | 1.1 | ab | 0.0 | 0.0 | abcd | 0.0 | 94.8 | abc | 1.1 | abc | |||
| Saanen | 1.7 | 13.8 | abcd | 0.4 | abcd | 2.8 | ab | 2.6 | 8.1 | abcdefg | 0.1 | 33.8 | a | 2.9 | abc | |||
| Sable | 0.5 | 56.4 | abcde | 0.0 | abcdef | 8.5 | abc | 0.0 | 59.7 | ab | 0.0 | 85.7 | ab | 8.5 | abcde | |||
| Savannah | 0.0 | 15.9 | abcde | 20.9 | abcd | 65.5 | abcde | 0.4 | 0.0 | abcd | 0.1 | 47.2 | abc | 65.5 | abcde | |||
| Spanish | 0.0 | 6.0 | abcd | 11.6 | abcde | 42.6 | abcde | 0.8 | 7.4 | abcdef | 0.8 | 35.3 | a | 43.4 | abcdef | |||
| Toggenburg | 0.0 | 67.2 | abcde | 0.6 | abcd | 13.0 | abc | 0.0 | 0.5 | abcdef | 22.0 | 29.4 | a | 35.0 | abcde | |||
| Crossbred | 0.9 | 9.7 | abcd | 12.5 | abcde | 37.7 | abcde | 2.0 | 8.4 | abc | 0.7 | 48.8 | a | 38.3 | abcde | |||
| Other | 0.0 | 8.6 | abcd | 7.1 | abcd | 12.3 | abbcde | 2.3 | 14.1 | abcdef | 3.9 | 53.4 | abc | 16.2 | abcde | |||
Lower case letter coding denotes which levels of a given breakout variable have significantly different proportions of goats with the prolonged incubation or resistant genotypes. Levels that share a letter are not significantly different and levels that do not share a letter are significantly different at the 0.05 significance level with Tukey-Kramer adjustments.