Table 1.
Vanessa cardui Genome Assembly and Annotation Summary
| Genome assembly statistics | |
| Total length (bp) | 425,413,715 |
| Contig N50 length (bp) | 10,297,021 |
| Contig N90 length (bp) | 1,988,721 |
| Longest contig length (bp) | 15,944,461 |
| Number of contigs | 205 |
| Number of contigs larger than N50 | 16 |
| Number of contigs larger than N90 | 54 |
| Genome characteristics | |
| GC content | 33.37% |
| Number of protein-coding genes | 14,437 |
| Average transcript length (bp) | 7,947.27 |
| Average CDS length (bp) | 1,285.78 |
| Average exon length | 208.90 |
| Average exons per gene | 6.26 |
| Repetitive sequences (% of genome) | |
| DNA (bp) | 26,747,187 (6.29%) |
| LINE (bp) | 44,319,571 (10.42%) |
| SINE (bp) | 36,688,707 (8.62%) |
| LTR (bp) | 7,782,116 (1.83%) |
| Simple repeat (bp) | 7,080,895 (1.66%) |
| Unknown (bp) | 23,180,775 (5.45%) |
| Total (bp) | 142,884,949 (33.59%) |
| Gene annotations (% of all genes) | |
| SwissProt | 13,751 (95.25%) |
| KEGG | 8,153 (56.47%) |
| GO | 9,563 (66.24%) |
| PFAM | 12,000 (83.12%) |
| InterProScan | 10,533 (72.96%) |
| Total | 14,097 (97.64%) |