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. 2021 Jul 20;10(7):giab048. doi: 10.1093/gigascience/giab048

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© The Author(s) 2021. Published by Oxford University Press GigaScience.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 3: — Genetic diversity of the Duroc population. (A) The distribution of SNPs in 1-Mb windows across the genome. (B) Histogram of allele counts by each 1% MAF bin. Novel (red) and known SNP sets (blue) were defined by comparing them to the pig dbSNP database. (C) Principal component 1 and 2 distribution in the Duroc population. (D) The extent of linkage disequilibrium (LD), in which the LD on chromosomes 6 (SSC6) and 10 (SSC10) represent the highest and lowest levels across the whole genome, respectively.