TABLE 1.
Structural features | Technique | References | ||
---|---|---|---|---|
Global | Local | Experimental | Computational | |
Compact, globular structure Electrostatic interactions (120–140 and 30–100 residues) | – | Technique: PRE1 | Technique: MD2 | Dedmon et al. (2005a) |
Spin label MTSL | ||||
Cysteine mutations at Q24, S42, Q62, S87 and N103 | ||||
Brief long-range intramolecular electrostatic interactions | – | Technique: NMR3 | – | Bertoncini et al. (2005) |
100uM WT αSyn in buffer (25mM Tris.Cl pH = 7.4/0.1M NaCl) | ||||
Extended tendency | N-terminal: Helical elements | Technique: NMR3 | Technique: restrained MD2 | Allison et al., 2009 |
Brief long-range intramolecular electrostatic interactions | Solvent: implicit | |||
Compact structure at both neutral and low pH | – | Technique: PRE1 | – | Wu and Baum, (2010) |
C- to N-terminal interchain interactions | Various pH, concentrations, solvents | |||
Compact structure (low pH) | – | Technique: Single-Molecule FRET4 | Technique: constrained excluded volume MC5 | Nath et al. (2012) |
50 pM solution of double-labeled WT αSyn | Technique: All-atom MD2 | |||
Solvent: explicit | ||||
High-energy phase: Extended random coil Low-energy phase: Extended all-β | High-energy phase: | – | Technique: MC5 | Jónsson et al. (2012) |
N-terminal: Helical elements | Solvent: Implicit | |||
Low-energy phase: | ||||
N-terminal + NAC + C-terminal (residues 30–100): β-strands | ||||
C-terminal: β-structures + random coil | ||||
– | N-terminal + NAC + C-terminal (residues 1–100): Helical elements | – | Technique: REMD6 | Coskuner et al., (2013) |
Solvents: implicit | ||||
Technique: MD2 | ||||
Solvents: explicit | ||||
Compact structure | N-terminal: Helical elements + β-hairpin spanning residues 38–53 | – | Technique: coarse-grained MD2 | Yu et al. (2015) |
Electrostatic interactions (118–130 and 38–53 residues) | β-strands: β1 (38–44) and β2 (47–53) | Solvent: explicit | ||
α+β | NAC: Helical elements | |||
C-terminal: Helical elements + β-structures | ||||
Compact, globular structure | N-terminal: Helical elements | Technique: HS-AFM7 | Technique: REX8/DMD9 | Zhang et al. (2018) |
Tail-like protrusions | NAC: Helical elements | 50nM WT αSyn in PBS | Solvent: Lazaridis-Karplus implicit | |
All-α | C-terminal: Helical elements | |||
Compact, globular structure | N-terminal: Helical elements spanning residues 25–55 | Techniques: | Technique: REX8/DMD9 | Brodie et al., 2019 |
Brief long-range intramolecular | NAC: β-structures | LD-CL10, CD11,HDX12, | Solvent: Lazaridis-Karplus implicit | |
electrostatic interactions α+β | C-terminal: β-structures + random coil | LC-MS13/MS Analysis | ||
Compact, globular structure | N-terminal: Helical elements | – | Technique: MD2 | Bhattacharya et al. (2019) |
Tail-like protrusions | NAC: Helical elements | Solvents: explicit | ||
All-α | C-terminal: Helical elements + random coil | |||
– | N-terminal: Helical elements spanning residues 10–30 and a weak helix centered around residue 50 | Technique: NMR3 | – | Kim et al. (2020) (review) |
NAC: tendency to form β-structures helix centered around residue 90 |
Paramagnetic Relaxation Enhancement.
Molecular Dynamics simulations.
Nuclear magnetic resonance.
Fluorescence resonance energy transfer.
Monte Carlo simulations.
Replica Exchange Molecular Dynamics simulations.
High-Speed Atomic Force Microscopy.
All-atom Replica Exchange.
Discrete Molecular Dynamics.
Long-distance crosslinking.
Circular dichroism.
Hydrogen-deuterium exchange.
Liquid chromatography–mass spectrometry.