Table 2.
The expression of GGDEF, EAL, HD-GYP proteins in rpoS mutation and ancestral strains
| ORF | Name | Domain signature | Activity* | RpoSP251L vs Ancestral FC | p value | RpoSQ266stop vs Ancestral FC | p value |
|---|---|---|---|---|---|---|---|
| PA0169 | siaD | GGEEF | DGC | − 2.17 | 3.39E-10 | − 2.21 | 2.09E-10 |
| PA2572 | YN-GYP | – | 7.12 | 5.02E-202 | 19.45 | 1.16E-234 | |
| PA0847 | GGDEF | DGC | 2.94 | 7.01E-42 | 3.09 | 4.48E-43 | |
| PA1107 | roeA | GGEEF | DGC | 2.16 | 3.15E-18 | 2.52 | 3.39E-23 |
| PA1120 | yfiN, | GGDEF | DGC | 2.27 | 1.85E-19 | 2.85 | 2.19E-27 |
| PA3343 | GGEEF | DGC | – | – | 2.09 | 1.07E-29 | |
| PA3702 | wspR | GGEEF | DGC | 2.17 | 5.79E-25 | 2.55 | 3.33E-34 |
| PA4929 | nicD | GGDEF | DGC | 5.4 | 1.61E-174 | 8.85 | 2.60E-236 |
| PA0290 | GGEEF | ND | – | – | 2 | 3.72E-17 | |
| PA0575 | rmcA | GGDEF, EAL | ND | 3.5 | 4.78E-92 | 4.63 | 3.54E-125 |
| PA1181 | GGDEF, ELL | ND | 3.18 | 3.48E-79 | 3.56 | 3.54E-125 | |
| PA2771 | GGEEF | ND | 3.4 | 2.17E-60 | 4.25 | 4.65E-74 | |
| PA0861 | rbdA | GGDEF, ELL | PDE | 4.19 | 2.22E-140 | 6.93 | 7.11E-230 |
| PA2072 | GGDEF, EAL | PDE | 7.55 | 8.41E-222 | 14.62 | 6.89E-293 | |
| PA3311 | nbdA | AGDEF, EAL | PDE | 7.65 | 6.06E-252 | 13.56 | 1.66E-279 |
| PA3825 | EVL | PDE | 3 | 9.51E-46 | 3.45 | 9.00E-52 | |
| PA4108 | HD-GYP | PDE | 3.42 | 2.03E-80 | 3.9 | 2.38E-92 | |
| PA4781 | HD-GYP | PDE | 8.8 | 2.99E-306 | 14.18 | 2.78E-130 |
*ND not determined, – not active, FC fold change