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. 2021 Jul 20;22:560. doi: 10.1186/s12864-021-07735-7

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© The Author(s) 2021, corrected publication 2022

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 1 — Characteristics of lncRNAs and protein coding genes that are differentially expressed in rice galls induced by Meloidogyne graminicola at 3 days post-inoculation. a Length distribution of all detected lncRNAs. b Length distribution of all detected coding transcripts. c Log₂ Fold Change of differentially expressed (DE) lncRNAs. d Log₂ Fold Change of DE coding transcripts. e Genomic positions of DE lncRNAs. f Histogram of lncRNA cluster sizes. For (f), DE lncRNAs were clustered with upstream/downstream neighbouring coding or non-coding genes that were also DE. The clusters were expanded until no DE coding or non-coding genes were found. Nt: nucleotides, NAT: natural antisense transcript