Table 1.
Rice miRNAs differentially expressed at 3 days after inoculation with M. graminicola as well as their targets according to our degradome sequencing data. Degradome sequencing was performed to evaluate the amount of cleaved miRNA target regions in the investigated tissues. Degradome Log2 Fold Change denotes the change in the number of cleaved target fragments in galls versus root tips.’–‘denotes that the degradome data did not indicate significant target cleaving by miRNAs in galls and/or roots
| ID miRNA | miRNA Log2 Fold change | ID Target | Target Description | Degradome Log2 Fold Change |
|---|---|---|---|---|
| osa-miR398b | −4.48 | – | – | – |
| osa-miR169f.1 | −4.17 | Os03g0696300 | NUCLEAR FACTOR-Y subunit A4 | −3.10 |
| Os03g0174900 | NUCLEAR FACTOR-Y subunit A1 | −3.67 | ||
| Os12g0618600 | NUCLEAR FACTOR-Y subunit A10 | −1.74 | ||
| osa-miR397b | −2.27 | – | – | – |
| osa-miR6255 | −2.22 | – | – | – |
| osa-miR164a | −2.07 | Os04g0460600 | NAC domain-containing protein 004 | −3.78 |
| osa-miR408-3p | −2.07 | Os08g0482700 | Cupredoxin domain containing protein | −4.78 |
| osa-miR164d | −1.80 | Os04g0460600 | NAC domain-containing protein 004 | −3.78 |
| osa-miR3979-3p | −1.62 | – | – | – |
| osa-miR166a-3p | −1.33 | Os10g0480200 | rice homeobox gene 9 | 0.08 |
| osa-miR166j-3p | −1.21 | Os10g0480200 | rice homeobox gene 9 | 0.08 |
| osa-miR167g | −1.15 | – | – | – |
| osa-miR319b | 1.62 | Os12g0616400 | PROLIFERATING CELL FACTOR 8 | 2.03 |
| osa-miR1850.2 | 2.02 | – | – | – |
| osa-miR1850.1 | 2.30 | – | – | – |
| osa-miR5159 | 2.38 | – | – | – |
| osa-miR319a-3p.2-3p | 3.59 | Os12g0616400 | PROLIFERATING CELL FACTOR 8 | 2.03 |