Table 2.

Protein coding genes putatively regulated by TE associated siRNAs in their promoters in rice galls at 3 days post inoculation with M. graminicola. LFC log2 Fold Change, TE transposable element

Target	Description	LFC Target gene	siRNA	LFC siRNA
Os03g0645100	Similar to pyruvate dehydrogenase E1 component subunit beta	0.27	osa-b1.0r1–73,430	− 2.14
Os04g0460300	Amino acid transporter, transmembrane domain containing protein	2.04	osa-b1.0r1–86,468	−1.90
Os06g0342100	Signal recognition particle 19 kDa protein (SRP19)	0.76	osa-b1.0r1–108,253	−1.59
Os07g0435400	Similar to WD40	0.50	osa-b1.0r1–120,740	− 2.58
Os12g0227400	Allyl alcohol dehydrogenase	1.66	osa-b1.0r1–41,090	−1.48