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. 2021 Jun 8;5(1):479–495. doi: 10.3233/ADR-210012

Table 1.

The binding free energies (ΔGbinding) of Aβ and peptide-Aβ complexes with the MM_GBSA method and the contributions of each force

Contribution WRW FWW RRY
mean SEM mean SEM mean SEM
ΔEelec –127.8622 31.7238 –39.2240 32.8006 –227.0111 23.7255
ΔEvdw –31.5055 3.5854 –32.2817 5.2270 –23.3137 4.9036
ΔEgas –159.3677 31.6756 –71.5057 35.9271 –250.3248 24.3890
ΔGnonpolarp –4.7953 0.3023 –5.7332 0.6516 –3.7533 0.4370
ΔGGB 141.7892 32.1894 52.2206 33.8447 248.2323 23.5212
ΔGsolvation 136.9939 32.2142 46.4874 33.4034 244.4790 23.4184
ΔGbinding –22.3738 –25.0183 –5.8458
Contribution RWY WWW RGD WRY
mean SEM mean SEM mean SEM mean SEM
ΔEelec –105.6885 21.4133 15.1222 24.6331 –134.6431 31.9144 –188.2275 22.2736
ΔEvdw –24.5772 4.4112 –32.8116 5.4779 –13.2767 2.6566 –41.7505 4.8319
ΔEgas –130.3117 22.3945 –17.6893 27.6163 –147.9199 32.3657 –229.9781 25.0730
ΔGnonpolarp –4.2947 0.4543 –5.4620 0.6199 –2.7636 0.2908 –6.4817 0.3609
ΔGGB 118.0171 20.9540 –3.1101 24.9175 142.9110 30.3403 202.4201 22.6944
ΔGsolvation 113.7224 20.7604 –8.5721 24.6319 140.1474 30.1113 195.9385 22.5127
ΔGbinding –16.5893 –26.2614 –7.7724 –34.0396