Table 2.

Parameter settings for simulation

(A) For structures inferred from three K562 single cells
Type	GSM #							Sequencing depth	# True 0 positions	Range of values
K562 T1	2109974		5.6	−1	0.9	0.9	0.9	6800	91	0.90–16.07
K562 T2	2109985		6.3	−1	0.9	0.9	0.9	12,000	91	0.89–34.41
K562 T3	2109993		6.7	−1	0.9	0.9	0.9	13,410	91	0.87–50.31
(B) For a structure generated from the helix model
Type								Sequencing depth	# true 0 positions	Range of values
Helix T1	0.04		1.0	−1	0.1	0.1	0.1	6637	91	0.83–44.84
Helix T2	0.04		1.1	−1	0.1	0.1	0.1	6702	91	0.91–49.80
Helix T3	0.04		1.2	−1	0.1	0.1	0.1	6437	91	1.02–53.96