Table 3.
Time and memory requirementa for analyzing whole genome scHiC data
| Methodb | Time | Memory |
|---|---|---|
| MAGIC-Block | 2704 s | <4Gb |
| McImpute-Block | 331 s | <4Gb |
| scImpute-Block | 2343 s | <4Gb |
| scRMD-Block | 156 s | <4Gb |
| McImpute | 170 s | 8.7Gb |
| scRMD | 132 s | 8.2Gb |
aThe computational time (in seconds) and memory are based on a Linux machine with the following specifications: Intel(R) Xeon(R) CPU E5-2690 v3 @ 2.60GHz; RAM:128 GB.
bBlock size of 100 was used for all Algorithm-Block methods. Further, for McImpute and scRMD, computational time was also provided for whole genome analysis without the CUT step.