Table 2.

Deep learning algorithm in DNA motif mining

Model	DeepBind	DeepSNR	DeepSEA	Dilated	DanQ	BiRen	KEGRU	iDeeps
Architecture	CNN	CNN	CNN	CNN	CNN + RNN	CNN + RNN	RNN	CNN + RNN
Embedding	NO	NO	NO	NO	NO	NO	YES	NO
Input	One-hot	One-hot	One-hot	One-hot	One-hot	k-mer	k-mer	One-hot

It shows the architecture, embedding and input of eight classic deep learning models in motif mining.