Experimental models: Organisms/strains |
|
FreeStyle HEK293-F Cells |
Thermo Fisher |
Cat# R79007
|
HEK293T |
ATCC |
RRID: CRL-3216 |
|
Chemicals, peptides, and recombinant proteins |
|
Turbofect transfection reagent |
Thermo Fisher |
Cat# R0533 |
polyethyleneimine |
Polysciences |
Cat# 24765 |
protease inhibitor cocktail |
Roche |
Cat# 04693124001 |
DNase |
Sigma |
Cat# DN25 |
RNase |
Sigma |
Cat# R4875 |
PMSF |
Sigma |
Cat# P7626 |
LMNG |
Anatrace |
Cat# NG310 |
CHS |
Anatrace |
Cat# CH210 |
Amphipol A8-35 |
Anatrace |
Cat# A835 |
Adenosine 3′,5′-cyclophosphate |
Sigma |
Cat# A9501 |
|
Critical commercial assays |
|
QuikChange Lightning Site-Directed Mutagenesis |
Thermo Fisher |
Cat# 210518 |
|
Recombinant DNA plasmids |
|
pEGA: HCN4ΔC |
This paper |
N/A |
pEGA: HCN4ΔC (H407A, H553A) |
This paper |
N/A |
pCI:TRIP8b(1a-4) |
Porro et al., 2020 |
N/A |
pCI:rbHCN4 |
Porro et al., 2019 |
N/A |
pCI:rbHCN4 (H407A) |
This paper |
N/A |
pCI:rbHCN4 (H553A) |
This paper |
N/A |
pCI:rbHCN4 (E557A) |
This paper |
N/A |
pCI:rbHCN4 (H407A, H553A) |
This paper |
N/A |
pCI:rbHCN4 (H407A, H553A, E557A) |
This paper |
N/A |
pCI:hHCN1 |
Porro et al., 2019 |
N/A |
pCI:hHCN1 (E436A) |
This paper |
N/A |
pCI:mHCN2 |
Porro et al., 2019 |
N/A |
|
Deposited data |
|
CryoEM map of HCN4holo |
This paper |
EMDB: EMD-12513 |
CryoEM map of HCN4apo/LC |
This paper |
EMDB: EMD-12512 |
CryoEM map of HCN4apo/AM |
This paper |
EMDB: EMD-12466 |
Atomic model ofHCN4holo |
This paper |
PDB: 7NP4
|
Atomic model ofHCN4apo/LC |
This paper |
PDB: 7NP3
|
Atomic model ofHCN4apo/AM |
This paper |
PDB: 7NMN
|
|
Software and algorithms |
|
RELION-3.0 |
Zivanov et al., 2018 |
https://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page |
CryoSPARC v.2 |
Punjani et al., 2017 |
https://cryosparc.com |
PHENIX |
Adams et al., 2010 |
https://phenix-online.org |
Coot |
Emsley et al., 2010 |
https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/ |
UCSF CHIMERA |
Pettersen et al., 2004 |
http://www.cgl.ucsf.edu/chimera |
MOLPROBITY |
Chen et al., 2010 |
http://molprobity.biochem.duke.edu/ |
HOLE |
Smart et al., 1996 |
http://www.holeprogram.org/ |
AutoDock 4.2.6 in conjunction with AutoDockTools 1.5.6 |
Morris et al., 2009 |
http://autodock.scripps.edu/ |
GROMACS 2019 |
Abraham et al., 2015; Van Der Spoel et al., 2005
|
https://manual.gromacs.org/documentation/2019/index.html# |
LINCS |
Hess et al., 1997 |
https://dblp.uni-trier.de/rec/journals/jcc/HessBBF97.html |
Biotite |
Kunzmann and Hamacher, 2018 |
https://github.com/biotite-dev/biotite |
|
Other |
|
Grids |
Quantifoil |
Three-hundred mesh holey gold R0.6/1 and R1.2/1.3 |