Table 2.
List of genes involved in the biosynthesis and degradation of proline in rice (Oryza sativa L.) along with their chromosomal locations, alternative spliced forms, CDS and polypeptide length, localization and co-expressed genes
| Gene | Chr. No | Locus | CDS coordinate 5′to 3′ | CDS (bp) | Amino acids | Mass (kDa) | pI | Location | Co-expressed genes |
|---|---|---|---|---|---|---|---|---|---|
| OsOAT | 3 | LOC_Os03g44150.1 | 24,818,067—24,810,051 | 1422 | 473 | 51.44 | 7.54 | Chl1, Mt2, ER1 | AT5G46180, Bradi1g13830, GRMZM2G08082, GSVIVG00021525001, LOC_Os03g44150, POPTR_0011s02390, Sb01g013600 |
| OsP5CS1 | 5 |
LOC_Os05g38150.1 LOC_Os05g38150.2 |
22,381,039—22,374,029 | 2151 | 716 | 77.74 | 6.37 | Chl1, ER1, Nu1, Cy2, Mt2, Plas1 | AT2G39800, AT3G55610, Bradi2g54920, GRMZM2G028535, GRMZM2G375504, GSVIVG00016467001, LOC_Os01g62900, LOC_Os05g38150, POPTR_0008s06060, POPTR_0010s20590, Sb03g039820, Sb09g022290 |
| OsP5CS2 | 1 | LOC_Os01g62900.1 | 36,430,978—36,440,843 | 2208 | 735 | 79.50 | 6.10 | Chl1, Nu1, Cy2, Mt2, Vac1 | AT2G39800, AT3G55610, Bradi2g54920, GRMZM2G028535, GRMZM2G375504, GSVIVG00016467001, LOC_Os01g62900, LOC_Os05g38150, POPTR_0008s06060, POPTR_0010s20590, Sb03g039820, Sb09g022290 |
| OsP5CR | 1 | LOC_Os01g71990.1 | 41,721,574—41,718,016 | 855 | 284 | 29.67 | 6.92 | Chl2, Vac1, Cy1, Mt1 | AT5G14800, Bradi2g60730, GRMZM2G068665, GSVIVG00033588001, LOC_Os01g71990, POPTR_0006s04100, Sb03g045690 |
| OsPDH | 10 | LOC_Os10g40360.1 | 21,617,952—21,620,589 | 1473 | 490 | 51.63 | 6.49 | Chl1,2, Mt1,2 | AT3G30775, AT5G38710, Bradi3g32880, GRMZM2G053720, GSVIVG00036483001, LOC_Os10g40360, POPTR_0004s10610, POPTR_0017s14250, Sb01g029660 |
Chl Chloroplast; Mt Mitochondria; ER Endoplasmic reticulum; Nu Nucleus; Cy cytosol; Plas plasma membrane; Vac vacular; Pero peroxisome